Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11-
20] 14,543 sequences; 2,510,587,379 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq13 127 2e-24
seq11 98.7 8e-16
>seq13
Length=48154242
Score = 127 bits (140), Expect = 2e-24
Identities = 347/528 (66%), Gaps = 4/528 (1%)
Strand=Plus/Minus
Query 20248 TGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTA 20307
|||||||||||| | || ||| | || ||| | || |||||| || |||||||||
Sbjct 3964174 TGGAGACATTTTTGGGCAGAACACAAAGATATGGATTCAGATTATTCTGATCAAGGAGTA 3964115
Query 20308 GATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATT 20367
| ||| | ||||| || || || || ||||| ||||| | ||||||||||| ||
Sbjct 3964114 GGCCAACTTCAAAAAGTGATCAACACCATCAAAACCAACCCTGAAGACAGAAGAATCATC 3964055
Query 20368 TTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTA 20427
| || | ||||| | |||||| | ||| | |||| |||||||||| ||| |
Sbjct 3964054 ATGTGTGTTTGGAAACCAAAAGATTTTCCTCTGATGGTGCTGCCTCCATGCCATGCCTTC 3963995
Query 20428 TGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGAT 20487
||||| || ||| || ||| || |||| ||| |||| ||| | || | |
Sbjct 3963994 TGCCAGTTCTACAGTG--AATGGGGAGCTGTCCTGTTGGCTGTACCAAAGGTCAGGAGTC 3963937
Query 20488 ATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTA-CGTATATGATTGC 20546
||||| |||| || |||||||| || | | ||||| ||||||| | || |||||| |
Sbjct 3963936 ATGGGCTTGGGCGTGCCTTTCAACATCGAGTGCTATGCCCTGCTTACCTTACATGATTAC 3963877
Query 20547 ACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTA 20606
||| | || || | | | | | |||| | || | | ||| | || ||| ||||
Sbjct 3963876 ACACATCACGGACCTGCAGTCAGATAACTTTATGCATTCTTTGGGA-ATGCACATTTTTA 3963818
Query 20607 CCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAAC 20666
||| ||||| || || || | ||| | ||| | || | |||||| | |||||||
Sbjct 3963817 CCTGAATCACATTGAGCCACTGAAAATTCAGCTTCTACAAGAACCAAGAGCTTTCCCAAA 3963758
Query 20667 TCTTCGCATTACTCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTT 20726
|| || || || |||| | | ||| || | || ||| ||| || ||| | |
Sbjct 3963757 GCTCAAAATCCTTCAAAATGTTGAGAAAATTGACAACTTCAAACTTGAAGACTTTCAGAT 3963698
Query 20727 AGAAGGTTATAATCCCCATAATTCAATTCCAATGGAAATGTCTGTTTA 20774
|||| || |||| ||| | ||| | |||| ||| ||||||
Sbjct 3963697 TGAAGAGTACAATCTACATCCAACTATTAAAGTGGAGATGGTTGTTTA 3963650
>seq11
Length=52463945
Score = 98.7 bits (108), Expect = 8e-16
Identities = 119/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447
|||| | ||| | ||||| |||||||||| ||| || ||||| || ||||| | ||
Sbjct 43836335 AGATCTTCCTCTGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAA 43836394
Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507
| || |||| || || |||| || | || | ||| ||||| ||||| || || ||
Sbjct 43836395 TGGGGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGTGACATGGGCCTGGGCGTGCCCTT 43836454
Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549
||| || || || ||||| |||||||| || |||||||||||
Sbjct 43836455 CAACATCGCCAGCTATGCCCTGCTTACCTACATGATTGCACA 43836496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399113247505135
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |