Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq13 127 2e-24 seq11 98.7 8e-16 >seq13 Length=48154242 Score = 127 bits (140), Expect = 2e-24 Identities = 347/528 (66%), Gaps = 4/528 (1%) Strand=Plus/Minus Query 20248 TGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTA 20307 |||||||||||| | || ||| | || ||| | || |||||| || ||||||||| Sbjct 3964174 TGGAGACATTTTTGGGCAGAACACAAAGATATGGATTCAGATTATTCTGATCAAGGAGTA 3964115 Query 20308 GATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATT 20367 | ||| | ||||| || || || || ||||| ||||| | ||||||||||| || Sbjct 3964114 GGCCAACTTCAAAAAGTGATCAACACCATCAAAACCAACCCTGAAGACAGAAGAATCATC 3964055 Query 20368 TTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTA 20427 | || | ||||| | |||||| | ||| | |||| |||||||||| ||| | Sbjct 3964054 ATGTGTGTTTGGAAACCAAAAGATTTTCCTCTGATGGTGCTGCCTCCATGCCATGCCTTC 3963995 Query 20428 TGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGAT 20487 ||||| || ||| || ||| || |||| ||| |||| ||| | || | | Sbjct 3963994 TGCCAGTTCTACAGTG--AATGGGGAGCTGTCCTGTTGGCTGTACCAAAGGTCAGGAGTC 3963937 Query 20488 ATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTA-CGTATATGATTGC 20546 ||||| |||| || |||||||| || | | ||||| ||||||| | || |||||| | Sbjct 3963936 ATGGGCTTGGGCGTGCCTTTCAACATCGAGTGCTATGCCCTGCTTACCTTACATGATTAC 3963877 Query 20547 ACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTA 20606 ||| | || || | | | | | |||| | || | | ||| | || ||| |||| Sbjct 3963876 ACACATCACGGACCTGCAGTCAGATAACTTTATGCATTCTTTGGGA-ATGCACATTTTTA 3963818 Query 20607 CCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAAC 20666 ||| ||||| || || || | ||| | ||| | || | |||||| | ||||||| Sbjct 3963817 CCTGAATCACATTGAGCCACTGAAAATTCAGCTTCTACAAGAACCAAGAGCTTTCCCAAA 3963758 Query 20667 TCTTCGCATTACTCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTT 20726 || || || || |||| | | ||| || | || ||| ||| || ||| | | Sbjct 3963757 GCTCAAAATCCTTCAAAATGTTGAGAAAATTGACAACTTCAAACTTGAAGACTTTCAGAT 3963698 Query 20727 AGAAGGTTATAATCCCCATAATTCAATTCCAATGGAAATGTCTGTTTA 20774 |||| || |||| ||| | ||| | |||| ||| |||||| Sbjct 3963697 TGAAGAGTACAATCTACATCCAACTATTAAAGTGGAGATGGTTGTTTA 3963650 >seq11 Length=52463945 Score = 98.7 bits (108), Expect = 8e-16 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||| | ||||| |||||||||| ||| || ||||| || ||||| | || Sbjct 43836335 AGATCTTCCTCTGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAA 43836394 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || |||| || || |||| || | || | ||| ||||| ||||| || || || Sbjct 43836395 TGGGGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGTGACATGGGCCTGGGCGTGCCCTT 43836454 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| || || || ||||| |||||||| || ||||||||||| Sbjct 43836455 CAACATCGCCAGCTATGCCCTGCTTACCTACATGATTGCACA 43836496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399113247505135