Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 116 3e-21 seq161 114 1e-20 seq83 91.5 1e-13 seq138 87.8 2e-12 seq82 84.2 2e-11 seq30 82.4 7e-11 >seq4 Length=67649338 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| || || || ||||| ||||| || || Sbjct 16408287 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTT 16408228 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 16408227 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAAGAATCTTTGTAGAGCATGTACGGGGTA 16408168 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 16408167 CCTGTCTCTGTCTGAGACTCAATGATGGC 16408139 >seq161 Length=830332 Score = 114 bits (126), Expect = 1e-20 Identities = 272/404 (67%), Gaps = 13/404 (3%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||||||||| || | |||| ||| | | || | ||| ||||| || ||||| | Sbjct 530709 GATGAACCACTACTGAGAAAGAACCCCTGCCGCTTGGCCATCTTTCCTATGGAATACCAT 530650 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 | || ||| | |||| || || || || || || |||||||| | ||| || || | Sbjct 530649 GGTATCTGGCAGATGTGTAATAAAGCTGAGGCTTCCTTTTGGACAGCCGAGGAGGTGGCT 530590 Query 57627 CTGTCTAAGGATCTG-AGCGATTGGGATTCCCTCAAAGAATCTGAGA---GAAATTTTAT 57682 || || | ||| | ||| | ||||| |||| || ||||| || ||||||| Sbjct 530589 CT-TCCAGGGACATTCAGC-ACTGGGAAGCCCTGAAGC---CTGAGGAATGATATTTTAT 530535 Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742 ||| | |||| || | || ||| ||||| || || || ||||||||||| || Sbjct 530534 ATCCCACTTTCTGGCTTTCTCTGCGGCAAGTGATGGCATAGTAAATGAGAATTTGGTGGA 530475 Query 57743 AAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGC 57802 ||||| |||||||| ||| | || || || | | || || || || ||| | || Sbjct 530474 GCGATTTAGCCAAGAAGTTCAAATTACAGAAGCCCGCAGTTTCTATGGCTTCCAAATTGC 530415 Query 57803 CATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAA 57862 ||| |||||| | ||||| ||||||||| || || || || || ||| | || ||| Sbjct 530414 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGACTC 530355 Query 57863 CGACGAGAAACGTA--GACTGTTCAACGCGATCGAAACAATGCC 57904 | | ||||| | | || ||||| || || | ||||||||| Sbjct 530354 CAA--AGAAAGGGAATTTCTCTTCAATGCCATTGTAACAATGCC 530313 >seq83 Length=7591375 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 414041 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 414100 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || |||||||| ||| | || ||||||||| Sbjct 414101 GACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCAG 414160 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || ||||| ||| |||||||| || || ||| || ||| Sbjct 414161 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 414220 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || || || ||||| || | ||||||| ||| Sbjct 414221 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCTTGAGGGGAGGT 414268 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || Sbjct 413813 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 413872 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || |||||||| ||| | || ||||||||| Sbjct 413873 GACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCAG 413932 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || ||||| ||| |||||||| || || ||| || ||| Sbjct 413933 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 413992 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || || || ||||| || Sbjct 413993 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 414024 >seq138 Length=1287892 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || || || ||||| ||||| ||||| || |||||| | || || || Sbjct 343631 TCAAA-ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAG 343573 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| | || | || || | || ||| || |||||| | || || Sbjct 343572 CCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCCCCT 343513 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||||||||||| ||| | ||| Sbjct 343512 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGCCGTACTCTTTCTGAT 343453 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || ||||| || || || || ||||| ||| | |||||||| || Sbjct 343452 TACAATATCCAGAAAGAGTCCACCCTGCACCTGGTCCTTCGTCTGAGGGGTGG 343400 >seq82 Length=7573503 Score = 84.2 bits (92), Expect = 2e-11 Identities = 220/329 (67%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||||||||| ||| |||||| | ||| |||| ||||||| | || | || | Sbjct 1079029 GATGAACCACTACTGCGAGAGAA-CTCCGCCACTTTGCCATGTTTGCTATCAATTACCAC 1078971 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| | ||||| || || || || || || || ||||| | || || || || Sbjct 1078970 GATATTTGGCAAATGTATAAGAAAGCCGAGGCTTCCTTCTGGACAGCGGAGGAGGTGGAT 1078911 Query 57627 CTGTCTAAGGA-TCTGAGCGATTGGGATTCCCTCAAAGAATCTGAG---AGAAATTTTAT 57682 || || ||||| | ||| | ||||| |||| | | ||||| || ||||||| Sbjct 1078910 CTTTCCAAGGACAGTCAGC-ACTGGGAGGCCCTGA---AGCCTGAGGAATGATATTTTAT 1078855 Query 57683 TAAACACGTGTTGGCGTT-TTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCG 57741 ||| || | || || ||| ||||| ||||| || | | || ||| |||| Sbjct 1078854 ATCACATGTTCTAGCTTTCTTTGAACGCATGTGATGGCATAGCAAGTGAAAATCTGGTGC 1078795 Query 57742 AAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGG 57801 | ||||| ||||| || ||| | | || || | || || | || || ||| | | Sbjct 1078794 AGCGATTTAGCCAAGAGGTTCAAATTATAGAAGCCGGCTGTTTCTGTGGCTTCCAAATTG 1078735 Query 57802 CCATTGAAAACGTGCATTCAGAAATGTAT 57830 |||| |||||| | ||||| ||||| ||| Sbjct 1078734 CCATGGAAAACATACATTCTGAAATATAT 1078706 >seq30 Length=30016984 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||||||||| || |||||| || | || || || Sbjct 13544296 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCAAGGTCGAGCCCAGT 13544355 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| || | | |||| ||| ||| | | || || || Sbjct 13544356 GACACCATCGAGAATGTCAAAGCGAAATTTCAAGACATGGAGGGCATCTCACCTGA-TAG 13544414 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||| ||| ||||| || || |||||| |||| || ||| | ||||| ||| Sbjct 13544415 CAGCATCTGATATTTGCAGGTAAACAGCTGGAGGATGGCCGCACTCTCCCAGATTACAAC 13544474 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || |||||||| ||||| | |||| ||| ||||| || || Sbjct 13544475 ATCCAGAAAGAATCCACTCTATACTTGGTGCTTCACCTGAGAGGTGG 13544521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445685365240560