Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq161 100 6e-16 seq7 87.8 4e-12 >seq161 Length=830332 Score = 100 bits (110), Expect = 6e-16 Identities = 261/393 (66%), Gaps = 20/393 (5%) Strand=Plus/Minus Query 101970 TTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTT 102029 ||||||| ||||||| | || | ||||||| ||||| | |||||||| | ||| Sbjct 530209 TTTTCTGC-TCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTA 530151 Query 102030 CTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTG 102089 | || || || | || | |||||||| ||| || |||| ||| | || || Sbjct 530150 GCAAAGATGAGGGCTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACC----TGCTG 530095 Query 102090 -ATACCCCATCA------AGAG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAAT 102141 | | |||||| |||| ||| || | |||| ||| || | ||| ||| Sbjct 530094 CACAAACCATCAGAGCAGAGAGTAAAAGAAAC----AATTATCAATG---CTGTCACAAT 530042 Query 102142 TGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTT 102201 ||||| | || ||||||| || |||||| || || | || ||||| |||| || Sbjct 530041 AGAACAGGCGTTCCTCACAGAAGCCTTGCCTGAGAAGCTAATTGGGATGAATTGCACTTT 529982 Query 102202 GATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAA 102261 ||||| ||||||||||| ||||||||||||| || || | || |||| | | || Sbjct 529981 GATGAAGCAGTACATTGACTTTGTGGCAGATAGGCTTATGCTGGAGCTGGGCTTTAACAA 529922 Query 102262 GCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGAC 102321 | | || || || || || || ||||| |||||||| || || ||||| Sbjct 529921 GGTTTTCAAAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTAGAAGGGAAGAC 529862 Query 102322 CAACTTTTTTGAAAAGAGAGTCGCCGAGTATCA 102354 ||||| ||||| |||||||| | | ||||||| Sbjct 529861 TAACTTCTTTGAGAAGAGAGTAGGCAAGTATCA 529829 >seq7 Length=60492774 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| ||||||||||| || || |||||||||||| |||| | || ||||| || |||| Sbjct 54099371 TTGTAGCCTTTGCTGCTGTGGAGGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCT 54099312 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||||| | || | ||||||| ||||| | |||||||| Sbjct 54099311 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGA 54099266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989399608648565