Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq161 298 7e-76 seq67 201 1e-46 seq58 185 1e-41 seq13 138 1e-27 seq87 127 3e-24 seq4 116 5e-21 seq7 105 8e-18 seq19 98.7 1e-15 seq12 93.3 5e-14 seq12166 89.7 6e-13 >seq161 Length=830332 Score = 298 bits (330), Expect = 7e-76 Identities = 627/936 (67%), Gaps = 34/936 (4%) Strand=Plus/Plus Query 33229 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTC 33285 |||| ||||||||| | |||| || | |||| ||| ||| | || ||||| |||| Sbjct 529761 TGTTCATTTAAAAGTTAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTC 529820 Query 33286 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33345 |||| | || || | || || | || || || || ||||| || ||||| | ||| | Sbjct 529821 CCATCCTCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAA 529880 Query 33346 TATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAG 33405 |||| ||||| || ||||| ||||| || ||| ||| || ||||| |||| || Sbjct 529881 TATTCTCCATAAAGTCAAATGGATTTTCTACTTTGAAAACCTTGTTAAAGCCCAGCTCCA 529940 Query 33406 AAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA 33465 || | |||||||| || || || || || ||||||| |||||||| || | Sbjct 529941 GCATAAGCCTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAA 530000 Query 33466 TGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTA 33525 | || || | || | || | || || || | ||||| || | || ||||| | | Sbjct 530001 TTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCATTGATAA 530060 Query 33526 TAATAAATCTAACGGTTTCTTCACTC--GGTGGATGTAATAAATGTTTAAACATCAAACA 33583 | | | | || | ||| | || ||| || | | ||||| ||||||| || Sbjct 530061 TTGTTTCTTTTAC--TCTCTGCTCTGATGGTTTGTGCAGCAGGTGTTTGAACATCAGGCA 530118 Query 33584 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCC 33643 || || || ||||| | ||||| ||| | ||||| | ||| || ||||| ||||| || Sbjct 530119 GGCAAAGTCACAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGAAAATGTGAGGCC 530178 Query 33644 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGAT 33703 ||||| || || || || || ||| ||||||||||| Sbjct 530179 AGGCATCAGTCCTCGTTTCTTGAGCA-----------------------GAAAAGAAGAT 530215 Query 33704 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTAT 33760 ||| || || ||||||||||| | || | |||||||| | | | |||| || Sbjct 530216 TCCCTCCACAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAAT 530275 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 | | ||||||||||| ||||| || ||||||||||| ||| | |||||||| || Sbjct 530276 CAAACGCAAGGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATTGAA 530335 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 |||| | | |||| || ||||||| ||||| || || | |||||||||||||| Sbjct 530336 GAGAAATTCCCTTTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTC 530395 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 33940 ||||| |||||||| ||||| || || || || ||||||| | || || ||||| || Sbjct 530396 AGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTG 530455 Query 33941 CACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAA 34000 |||||| | |||||| || | ||||| ||||| ||||| |||||||| || ||| | Sbjct 530456 AACTTCTTGGCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGCAGA 530515 Query 34001 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 34060 || |||| | || |||||||||| ||| || || | || | ||| | | Sbjct 530516 GAAAGCCAGAAAGTGGGATATAAAATATCATTCCTCAGGCTTCAGGGCTTCCCAGTGCTG 530575 Query 34061 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 34120 || || | || | | |||| || || |||||||||| || ||||| || || ||| | Sbjct 530576 AATGTCCCTGGA-AGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTACA 530634 Query 34121 CATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 ||| | |||||| |||| |||| || || || || Sbjct 530635 CATCTGCCAGATACCATGGTATTCCATAGGAAAGAT 530670 >seq67 Length=10555288 Score = 201 bits (222), Expect = 1e-46 Identities = 563/860 (65%), Gaps = 8/860 (1%) Strand=Plus/Minus Query 33312 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 33371 || || || ||||| ||||| || || || || || |||||||| |||||||| ||||| Sbjct 3668870 TTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCCATAAAATCAAAGGGATTT 3668811 Query 33372 GTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCT 33431 | | ||| ||| ||||| | ||| || ||||| || || || ||||| Sbjct 3668810 TCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCACAAGTAATCTTTCAGCTACAAATTCA 3668751 Query 33432 ATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTA 33491 ||||| |||||| |||| ||||| | ||||| |||||| | | | || Sbjct 3668750 ATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCAACTGGCAAGTCTTCTGTT 3668691 Query 33492 AGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTT-CTTCACT 33550 | ||| || || ||||| || ||||| || || || || ||| |||| Sbjct 3668690 AAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTCCCTCACCCTTTTCTTCTGA 3668631 Query 33551 CGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTC 33610 | || || ||| | | |||||| | || || || || || | || | || || Sbjct 3668630 AGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAAGTCATAGAGAAGTTCTTCATC 3668571 Query 33611 TCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCA 33670 ||| | || | || || |||| |||||||| || || | || | ||| || | ||| Sbjct 3668570 TCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGATGGGACCTCTCTTCTTTAACCA 3668511 Query 33671 AAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 || || | ||| || ||||| || ||||| |||||||| || ||| | ||| | | Sbjct 3668510 GAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCACTGATGGCCACCAC 3668451 Query 33731 TCTCTCTCCATAACCGGCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787 ||| || ||| || | || || |||||| | ||||| || | || || Sbjct 3668450 TCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCATCACAGGGCCCAGTCTGTTTTTTT 3668391 Query 33788 TTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 33847 || || | ||||| |||| || |||||||| | | | || || || |||| | Sbjct 3668390 CTTAACGTATGGCATTGTTTTAATTGCATTAAATAAAAATTTCCCTTTCTTGGGATCTCT 3668331 Query 33848 AACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTG 33907 | |||||| || | | ||| || || | || |||| || | ||| || || Sbjct 3668330 GATTCTAGTATCTATTAGCAAACTGTATATCTTTGAGTGAACATTCTTTATGAGAATTTG 3668271 Query 33908 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAA 33967 ||| || |||||||| | |||||| | || ||||| || || ||| | || | || Sbjct 3668270 AAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACCTCCTGACTAAAGCTCTCCACCAA 3668211 Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGC---AAAAAACGCCAATACATGTTTTATAAA 34024 ||||||||| | |||||||||||| ||| |||||| || || | ||| | ||| Sbjct 3668210 ATTTTCATTTCCATTTCCATCACTGGTTGCAAAAAAAAAAGCTAAGATATGAGAGAGAAA 3668151 Query 34025 ATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATA-TCCACTT 34083 ||| || || |||| | | || || ||| | | | || ||| || |||| | || || | Sbjct 3668150 ATAATTCTCATCTGATTTAAGCTTGTTCTAGTGAAGGAGATCCTTTGATAAAGTCAACCT 3668091 Query 34084 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 34143 |||| ||||||| || ||||||| ||||| || |||||| ||||| || || | || | Sbjct 3668090 CTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTCATACATTTTCCAAATATCGGGGTACT 3668031 Query 34144 GGATTGGGAAAATAACAAAT 34163 | ||||| || || |||||| Sbjct 3668030 GAATTGGAAATATGACAAAT 3668011 >seq58 Length=13050397 Score = 185 bits (204), Expect = 1e-41 Identities = 621/949 (65%), Gaps = 26/949 (3%) Strand=Plus/Plus Query 33226 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAA 33282 || |||| |||| || ||| |||| || | |||| ||| || | || ||||| Sbjct 9035705 TTCTGTTCATTTAGAAATCAGCATCCAAGGTAAAAGAATTCCCTGTTGGATTTGACATCT 9035764 Query 33283 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 33342 ||||||| | || || ||||| || || || || || ||| | || |||| || Sbjct 9035765 CTCCCATCCTCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCTG-TG 9035823 Query 33343 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAA-T 33401 | ||||| ||||| || ||| | ||||| || || ||| || |||| |||| | Sbjct 9035824 AAATATTCTCCATAAAGTCAGATGGATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCT 9035883 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 ||| | | | || ||||| |||||||| ||||| ||||||| || ||||| Sbjct 9035884 TCATCA-TAAGCCTGTCTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTCATC 9035942 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || ||| || || || | ||| | | || || || ||||| | | || ||||| Sbjct 9035943 CCAGTGAACTTCACAGGCAAGGCCTCCATGAGGAACTCCTGTTCTAAGCTGACAGCATT- 9036001 Query 33522 GTTATAATAAATCTA--ACGGTTT-CTTCACTCGGTGGATGTAATAAATGTTTAAACATC 33578 | || |||| ||| || | | || || | | | | |||| | ||||| |||||| Sbjct 9036002 GATA-AATATTTCTTTTACTCTCTGCTCCAATGGTTTG-TGTAGCAGGTGTTTGAACATC 9036059 Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 | || || | || || | | |||||| ||||| ||||| | ||| | |||| | Sbjct 9036060 AGGCAGGCAGAGTCACAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAAC--TT 9036117 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698 || || ||||| | || | || || | | | ||||| || | || || | | ||| Sbjct 9036118 AGGCCAGGCATCAATCCCCATTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAG 9036177 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCA 33755 ||| ||||||| || || |||||||| | || | |||| || | | | |||| Sbjct 9036178 AAGTTTCCTTCCACAGCGGCAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCC 9036237 Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 ||||| | || ||| | ||||| |||||| |||| || ||||| |||||| Sbjct 9036238 CCAATCCAATGCAAGACCTAATTTACTTTCTTCTTTACATAAGGTATTGTTTCAATGGCA 9036297 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 || |||||| | | |||| || |||||||| || || || | ||||||||| Sbjct 9036298 TTGAAGAGAAATTCCCTTTCTTTGAAATCTTTAA-----GTGTCAATAAGGAGACTATAC 9036352 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 ||||| |||| | |||||| ||||| || || || | |||||||| | | || ||| Sbjct 9036353 ATTTCACAATGTA-GTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTA 9036411 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 || || ||||| | |||| || | ||||||||||| | ||| |||||||| ||| Sbjct 9036412 ATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTATTATGCCATCACTTGCT 9036471 Query 33996 GCAAA-AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054 ||||| ||| | | ||| ||||||||| | | || | | | || |||| Sbjct 9036472 GCAAAGAAATTCATAATTATGAGACATAAAATATCATACCTCAGATTTCAG-GGCTTCCT 9036530 Query 34055 ATCATTG-ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || | || || || || ||| | || | || ||||| |||| || | || |||| Sbjct 9036531 AGTATAGAATGTCCTTGGAAATAGCTACCACCTCTTCTGTCAAAAAGGAACCTTCAGCCT 9036590 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | ||| | || | ||| || ||||| ||| ||| || || | ||||| Sbjct 9036591 TCTTAGAAATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAA 9036639 >seq13 Length=48154242 Score = 138 bits (152), Expect = 1e-27 Identities = 544/843 (65%), Gaps = 47/843 (6%) Strand=Plus/Minus Query 33283 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 33342 |||| || || || || ||| | || | || || || || ||||| || ||||||| || Sbjct 23471110 CTCCAATCTTCTGATACTCAACTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTG 23471051 Query 33343 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATT 33402 | ||||| | ||| | |||| || || || || |||| | || | |||| || Sbjct 23471050 AAATATTCTTCATAATGTCAAGTGGGTTTTCTACTCTGAAAATCTCACTAGAGCCCAGTT 23470991 Query 33403 -CAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 ||| | | | || || || || || || || | ||||||| || ||||| Sbjct 23470990 TCAGCA-TAAGCCTGTCCGCCACAAACTCAATGCACTACTTCATCAAAGAGCAGTTCATC 23470932 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || ||||| || || || | ||| || || || || ||||| || || | | || Sbjct 23470931 CCAATGAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTATCC-TAACAAAATT 23470873 Query 33522 GTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAA 33581 | ||||| | | ||| | | || | ||| |||| || | ||| ||||| | Sbjct 23470872 G--ATAATTACTTTAATCCTCTTCTCCCATAGTG--TGTAGCAAGTATTTGAACATTGAG 23470817 Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || ||||| | || ||||| ||||| | ||| | ||||| ||||| Sbjct 23470816 CAGGCAAAATCAC-----------TCATCTCTGCTAATAAGTTCACTGGAAAATGTGAGA 23470768 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG--GAAGCGAATGATCCGGAAAAGA 33699 || ||||| || | | || |||||||| ||||| || || || || || |||| || Sbjct 23470767 CCAGGCATCAGCCATCATTTCTTAAGCCAGAATATACTGATGCAAAAGAACCAGAAAGGA 23470708 Query 33700 AGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTA 33759 ||||| |||| || ||||||||| | | |||| || || | | | || Sbjct 23470707 AGATTTCTTCCACATTAGCAAAGGCTACATCATGCTCTTCACAAATAGACTTTT----TA 23470652 Query 33760 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33819 ||| || || |||| | ||||| || |||||||||||| |||| || |||| | Sbjct 23470651 TCCTGATT----CCAAATCTGTTTTCTTCTTCACACAAGGCATCATTTCAGTGCCATTGA 23470596 Query 33820 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG---ACTATACA 33876 ||| | | | |||||| || || ||| ||| | ||| | ||| ||| |||| Sbjct 23470595 AGATAAATTCTTTTTCTTTGGAATTTTT------AGTGT-GATAATAAGGAAACTGTACA 23470543 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 || | ||||| || ||| | ||||| || || ||||| |||||||| || || |||| Sbjct 23470542 TTACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGCTTCTGTAA 23470483 Query 33937 TCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 | || | |||| | |||| | | | || |||||| | ||| | ||||| ||| Sbjct 23470482 TTTGAATTTCTTGGCTAAATTGCTTCACCAATTTTTCACGTATTATGCTATCAC---CTG 23470426 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 34056 | |||| |||| |||||| |||||||| | | || || | | || |||| | Sbjct 23470425 CTAAAA--GCCAGAACATGTGCTATAAAATCTCTCTCCTCAAGCTTCAG-GGCTTCCCAG 23470369 Query 34057 CATTGATATCTT--TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 |||| || || | | | ||| || || | ||||||||||| || ||||| || || Sbjct 23470368 GGTTGA-ATGTTCCTGAAGAGATCTACCTCGTTAACTGTCCAAAAGGAAGCCTCAGCTTT 23470310 Query 34115 TTT 34117 ||| Sbjct 23470309 TTT 23470307 >seq87 Length=7156779 Score = 127 bits (140), Expect = 3e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | ||||||||||||| ||||| |||||||| |||| Sbjct 718051 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTTAGAATGCATGTTTTCTGTGGC 718110 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 | || || || |||||||| | | || ||||| || |||||| | ||||| ||| Sbjct 718111 AACTTGGAAGCCATAGAAACAGCACACTTCTGTAATTTGAACTTCTTGGCTAAATCATTC 718170 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 | ||||||||||| ||| |||||||| |||||||| || |||| ||| | ||| Sbjct 718171 CACCAAATTTTCATTTGTTATGCCATCACTTGCTGCAAAGAAAGCCAGAACAAGCAATAT 718230 Query 34022 AAAATATTTTTCGTCTGG 34039 ||||||| ||| || || Sbjct 718231 AAAATATCGTTCCTCAGG 718248 >seq4 Length=67649338 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | Sbjct 16418169 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 16418110 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 16418109 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 16418050 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 16418049 CTGTTTCTTACACCATA 16418033 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || ||| |||||||| |||||||| |||||||||||||| | || ||||| || | || Sbjct 16406669 CTCCACCCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCG 16406610 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || ||||| |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 16406609 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 16406550 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 ||||||| ||| || || | ||||||| || Sbjct 16406549 AGGTTCCAGGTAAATAGCAAATGCTCCAGGACG 16406517 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || |||||||| || |||||| ||| | || || || ||||| || | Sbjct 16420953 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 16420894 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| || |||||||||||||| || || || ||||| |||||||| | | || | Sbjct 16420893 TCAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCTGCTGCCATTTTGAGAACAGTTT 16420834 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||| ||||||| | |||||| || || |||| Sbjct 16420833 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTAAGGTCATCAGGAA 16420783 Score = 102 bits (112), Expect = 1e-16 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 62607 TTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAA 62666 ||||||| | || ||| |||| || |||||||| || | || || ||||| | ||| Sbjct 16412768 TTACTGGAGAAC---CCT-CATAGGTTTCATATGGGCCATGCTCCTTTGCTAGGTCACAG 16412713 Query 62667 CTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCT 62726 || || || | || || |||||||| ||||||||||||| |||||| || || || Sbjct 16412712 CTGGCTTCCAGGGCTCCATAATAAATAGTTTCAAAGATCTGCTTATTCAGTAACTGGGCC 16412653 Query 62727 TCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCA 62786 || || || ||||| || || | | || ||||| || || || | || ||||| ||| Sbjct 16412652 TCTGGACTCTCAAAAGGGTATCTCATCAGGATAAAAGCATCTGCCAGACCCTGAACCCCA 16412593 Query 62787 ATACCGATAGGTCTATGTCTCTTATTAGA 62815 || || ||||| | ||| | ||||| || Sbjct 16412592 ATTCCAATAGGGCGATGGCGTTTATTTGA 16412564 >seq7 Length=60492774 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| ||||| || ||||| || || || || | Sbjct 54099246 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 54099305 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || |||||||||||||| || || |||||||||| Sbjct 54099306 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 54099365 Query 33724 C 33724 | Sbjct 54099366 C 54099366 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 ||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 54101125 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 54101184 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || |||||||| | || || ||||| || |||||| | |||||| || Sbjct 54101185 ATTTGGAAGCCATAGAAACAGCGTGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTC 54101243 Score = 89.7 bits (98), Expect = 6e-13 Identities = 119/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 33213 CAAATATCGGCAT---TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCT 33269 |||||| ||||| || |||| ||||||||||| |||| || | |||| ||| ||| Sbjct 54097663 CAAATAAAGGCATATCTTCTGTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCT 54097722 Query 33270 TCTTGA---GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 33326 | || ||||| |||||||| | || || || || || | || || || || ||| Sbjct 54097723 GTTGGATTCGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTA 54097782 Query 33327 GTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 || || ||||| | ||| ||||| ||||| || ||||| ||||| Sbjct 54097783 GTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAATGGATT 54097826 >seq19 Length=38427206 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| ||||| || ||||| || || | ||| || Sbjct 3916227 TCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCTTT 3916286 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 | ||| ||||| | ||| || ||||| || ||||| |||||||| || |||||||||||| Sbjct 3916287 AACCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCA 3916346 Query 33726 ATAAGTCTCTCTCC 33739 | | ||| || || Sbjct 3916347 ACCACTCTTTCCCC 3916360 >seq12 Length=50657735 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 ||||||||||| |||| ||| || | |||||||| | |||||||| |||| ||| Sbjct 40996164 GTTACTTTCTACGATGTATATATAATTCTGCAAGCTTTTGTACTGACTACTACAGTATTT 40996223 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 || | | | || | || |||||||||||| |||||||||||||| ||| ||| | |||| Sbjct 40996224 CTCGGTTTAACCATATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 40996282 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||| |||||||| ||||||||||||| ||||| ||||| || |||||||||||| Sbjct 40985211 TGCTCCTCAATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 40985270 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 40985271 ATCCGAATGG 40985280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437 |||||| | || |||||||| ||||| || ||| |||||||||||||||| || || ||| Sbjct 40991254 GGATCTCTGGGTTTGATTTTTGCATTAACCTTAAACAGACATAAACATCCTCTTAACCTG 40991313 Query 188438 TACCTACTTTGTGGATTT 188455 ||||| |||| ||||||| Sbjct 40991314 TACCTGCTTTTTGGATTT 40991331 >seq12166 Length=2209 Score = 89.7 bits (98), Expect = 6e-13 Identities = 119/164 (73%), Gaps = 6/164 (4%) Strand=Plus/Plus Query 33213 CAAATATCGGCAT---TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCT 33269 |||||| ||||| || |||| ||||||||||| |||| || | |||| ||| ||| Sbjct 2030 CAAATAAAGGCATATCTTCTGTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCT 2089 Query 33270 TCTTGA---GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTA 33326 | || ||||| |||||||| | || || || || || | || || || || ||| Sbjct 2090 GTTGGATTCGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTA 2149 Query 33327 GTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 || || ||||| | ||| ||||| ||||| || ||||| ||||| Sbjct 2150 GTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAATGGATT 2193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629703107033040