Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq161 298 7e-76 seq67 201 1e-46 seq12 181 1e-40 seq58 176 6e-39 seq13 129 8e-25 seq87 125 9e-24 seq4 122 1e-22 seq7 111 2e-19 seq19 102 1e-16 >seq161 Length=830332 Score = 298 bits (330), Expect = 7e-76 Identities = 627/937 (67%), Gaps = 36/937 (4%) Strand=Plus/Plus Query 35805 TGTTTCTTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTC 35861 |||| ||||||| | | |||| | | |||| ||| ||| | || ||||| |||| Sbjct 529761 TGTTCATTTAAAAGTTAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTC 529820 Query 35862 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA 35921 |||| | || || | || || | || || || || ||||| || ||||||| ||| | Sbjct 529821 CCATCCTCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAA 529880 Query 35922 TATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAG 35981 |||| ||||| || || |||||||| || || ||| || ||||| |||| || Sbjct 529881 TATTCTCCATAAAGTCAAATGGATTTTCTACTTTGAAAACCTTGTTAAAGCCCAGCTCCA 529940 Query 35982 AAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTA 36041 || | |||||||| ||||| || || || ||||||| |||||||| || | Sbjct 529941 GCATAAGCCTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAA 530000 Query 36042 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 36101 | || || | || | || | || || || | ||||| || | ||| || | | | Sbjct 530001 TTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCAT---TGA 530057 Query 36102 TAATAGATA---TTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAAC 36158 |||| | | ||||| | | || ||| | || | ||||| ||||||| | Sbjct 530058 TAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGCAGCAGGTGTTTGAACATCAGGC 530117 Query 36159 ATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTC 36218 | || || || ||||||| ||||| ||| | ||||| | ||| |||||||| ||||| | Sbjct 530118 AGGCAAAGTCACAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGAAAATGTGAGGC 530177 Query 36219 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAA 36278 | ||||| || || || || || ||| ||||||||| | Sbjct 530178 CAGGCATCAGTCCTCGTTTCTTGAGC-----------------------AGAAAAGAAGA 530214 Query 36279 TTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTA 36335 |||| || || || |||||||| | || | |||||||| | | | |||| | Sbjct 530215 TTCCCTCCACAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAA 530274 Query 36336 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 36395 || | ||||||||||| ||||| || |||||||||||||| | || ||||| | Sbjct 530275 TCAAACGCAAGGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATTGA 530334 Query 36396 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 36455 ||||| | | |||| || ||||||| || || ||||| | ||||||||||||| Sbjct 530335 AGAGAAATTCCCTTTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTT 530394 Query 36456 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 36515 | ||||| |||||||| ||||| ||||| || || ||||||| | || || ||||| | Sbjct 530395 CAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTT 530454 Query 36516 GTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 36575 | |||||| | |||||| || | ||||| ||||| ||||| || ||||| || ||| Sbjct 530455 GAACTTCTTGGCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGCAG 530514 Query 36576 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCAT 36635 | || |||| | || |||||||||| ||| | || | || | ||| | | Sbjct 530515 AGAAAGCCAGAAAGTGGGATATAAAATATCATTCCTCAGGCTTCAGGGCTTCCCAGTGCT 530574 Query 36636 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 36695 || || | || | | |||| || || |||||||||| || ||||| || || ||| Sbjct 530575 GAATGTCCCTGGA-AGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTAC 530633 Query 36696 ACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 |||| | |||||| |||| |||| || ||||| || Sbjct 530634 ACATCTGCCAGATACCATGGTATTCCATAGGAAAGAT 530670 >seq67 Length=10555288 Score = 201 bits (222), Expect = 1e-46 Identities = 568/865 (66%), Gaps = 18/865 (2%) Strand=Plus/Minus Query 35888 TTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTG 35947 || || || ||||| ||||| || ||||| || || |||||||| ||||| || ||||| Sbjct 3668870 TTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCCATAAAATCAAAGGGATTT 3668811 Query 35948 ATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCT 36007 | | | ||| ||| ||||| | ||| || ||||| || || |||||||| Sbjct 3668810 TCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCACAAGTAATCTTTCAGCTACAAATTCA 3668751 Query 36008 ATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTA 36067 ||||| |||||| |||| ||||| | || || |||||| | | | || Sbjct 3668750 ATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCAACTGGCAAGTCTTCTGTT 3668691 Query 36068 AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTG-----TTTCTT 36122 | ||| || || ||||| ||| || | | | ||| ||| | || |||||| Sbjct 3668690 AAAAACTCCTGCTCAATTTTGACAGCAT---TAACAAT-GATCTCCCTCACCCTTTTCTT 3668635 Query 36123 CACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 36182 | | || | ||| | | |||||| | || || || || || | || | | Sbjct 3668634 CTGAAGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAAGTCATAGAGAAGTTCTT 3668575 Query 36183 CGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAA 36242 | ||||| | || | || ||| |||| |||||||| || || | || | ||| || | Sbjct 3668574 CATCTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGATGGGACCTCTCTTCTTTA 3668515 Query 36243 GCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 36302 ||| || || | ||||| ||||| || |||||||||||||| || || | ||| | Sbjct 3668514 ACCAGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCACTGATGGCCA 3668455 Query 36303 TAAGTCTCTCTCCATAACCGGCACTGTCA---TG-TATCCACTTTTGAGCCCAATCGGCC 36358 | ||| || ||| || | ||| || || |||||| | ||||| || | Sbjct 3668454 CCACTCTTTCCCCAAAAGTAG-ACTTTCTATCTGCTATCCATCACAGGGCCCAGTCTGTT 3668396 Query 36359 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTA 36418 || || || || | |||||||| | || |||||||| | | | || || || | Sbjct 3668395 TTTTTCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAAAATTTCCCTTTCTTGGGA 3668336 Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 ||| | | ||||| || | | ||| || || | || |||| || | ||| Sbjct 3668335 TCTCTGATTCTAGTATCTATTAGCAAACTGTATATCTTTGAGTGAACATTCTTTATGAGA 3668276 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 36538 |||||||| || |||||||| | |||||| | || || || || || ||| | || Sbjct 3668275 ATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACCTCCTGACTAAAGCTCTCC 3668216 Query 36539 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC---GCCAATACATGTTTT 36595 | ||||||||||| | |||| ||||||| ||||||||| || || | ||| Sbjct 3668215 ACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAAAAAAAAAGCTAAGATATGAGAG 3668156 Query 36596 ATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATA-TC 36654 | |||||| || || | || | | || || ||| | | | || ||| || |||| | || Sbjct 3668155 AGAAAATAATTCTCATCTGATTTAAGCTTGTTCTAGTGAAGGAGATCCTTTGATAAAGTC 3668096 Query 36655 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 36714 || ||||| ||||||| || ||||||| ||||| || |||||| ||||| || || | Sbjct 3668095 AACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTCATACATTTTCCAAATATCGGG 3668036 Query 36715 ATATTGAATTGGAAAAATAACAAAT 36739 || ||||||||||| || |||||| Sbjct 3668035 GTACTGAATTGGAAATATGACAAAT 3668011 >seq12 Length=50657735 Score = 181 bits (200), Expect = 1e-40 Identities = 165/208 (79%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| | ||||||||| | ||||||| |||| ||| ||||| || ||||| Sbjct 41001761 TTACTTTTTATTAATTGCTTCCAAAAACCGTAACAGGTGCAGGAATAGATTAATAATATC 41001702 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 || ||||| |||| | ||||| ||||| |||||||| || || ||||| || ||||| Sbjct 41001701 CATGTAGAGGCTGATGGCAGCTAATACATACTCTTCAGGTGACAGTTTATGCATCAGTGA 41001642 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| ||||||||||| |||||||| ||||| | |||||| || | ||||| || ||||| Sbjct 41001641 GTGTGTGTCATAGATGATGAATCCACAGAAAAGAAGGGCTCCTACAGCAGCCAAGACCAA 41001582 Query 9407 CTCCACTGTTTCACTTTGCACAAATATC 9434 ||||||||| ||||| | | ||| ||| Sbjct 41001581 CTCCACTGTCTCACTATAAAAAAAAATC 41001554 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| ||||||||||||||| || | | | ||| Sbjct 40996282 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATATATGGTTAAACCGAGA 40996223 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||| ||||||||| | |||||||||| || | || ||||| ||||||||||| Sbjct 40996222 AATACTGTAGTAGTCAGTACAAAAGCTTGCAGAATTATATATACATCGTAGAAAGTAAC 40996164 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||| ||||||| Sbjct 40985280 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCATCCTCGA 40985221 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 | |||||||| | |||| || Sbjct 40985220 TTGAGGAGCAAGGGTAGCGG 40985201 >seq58 Length=13050397 Score = 176 bits (194), Expect = 6e-39 Identities = 618/948 (65%), Gaps = 24/948 (3%) Strand=Plus/Plus Query 35802 TTATGTTTCTTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAA 35858 || |||| |||| |||||| |||| | | |||| ||| || | || ||||| Sbjct 9035705 TTCTGTTCATTTAGAAATCAGCATCCAAGGTAAAAGAATTCCCTGTTGGATTTGACATCT 9035764 Query 35859 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATG 35918 ||||||| | || || ||||| || || || || || ||| | || ||||| || Sbjct 9035765 CTCCCATCCTCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCTG-TG 9035823 Query 35919 ATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAA-T 35977 | ||||| ||||| || || ||||||| || | ||| || |||| |||| | Sbjct 9035824 AAATATTCTCCATAAAGTCAGATGGATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCT 9035883 Query 35978 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 36037 ||| | | | || ||||| || ||||| ||||| ||||||| || ||||| Sbjct 9035884 TCATCA-TAAGCCTGTCTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTCATC 9035942 Query 36038 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 36097 || | | || || || | ||| | | || || || ||||| | ||| || | | Sbjct 9035943 CCAGTGAACTTCACAGGCAAGGCCTCCATGAGGAACTCCTGTTCTAAGCTGACAGCAT-T 9036001 Query 36098 GTTATA-ATAGATATTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAACATCA 36155 | || | || | ||||| | | || || | | | | | | | ||||| ||||||| Sbjct 9036002 GATAAATATTTCTTTTACTCTCTGCTCCAATGGTTTG-TGTAGCAGGTGTTTGAACATCA 9036060 Query 36156 AACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGA 36215 || || | || || ||| |||||| ||||| ||||| | ||| |||||| | | Sbjct 9036061 GGCAGGCAGAGTCACAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAAC--TTA 9036118 Query 36216 GTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGA 36275 | || ||||| | || | || || | | | ||||| || |||| || || | |||| Sbjct 9036119 GGCCAGGCATCAATCCCCATTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGA 9036178 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCAT 36332 | ||||||| || || |||||||| | || | |||| || | | | |||| Sbjct 9036179 AGTTTCCTTCCACAGCGGCAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCCC 9036238 Query 36333 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 36392 ||||| | || ||| | ||||| |||||| |||| ||||| || || |||| Sbjct 9036239 CAATCCAATGCAAGACCTAATTTACTTTCTTCTTTACATAAGGTATTGTTTCAATGGCAT 9036298 Query 36393 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 36452 | |||||| | | |||| || |||||||| || ||||| | |||||||||| Sbjct 9036299 TGAAGAGAAATTCCCTTTCTTTGAAATCTTTAA-----GTGTCAATAAGGAGACTATACA 9036353 Query 36453 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 36512 |||| |||| | |||||| ||||| ||||| || | |||||||| | | || |||| Sbjct 9036354 TTTCACAATGTA-GTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAA 9036412 Query 36513 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 36572 | || ||||| | |||| || | ||||||||||| | ||| || ||||| |||| Sbjct 9036413 TTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTATTATGCCATCACTTGCTG 9036472 Query 36573 CAAA-AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA 36631 |||| ||| | | ||| ||||||||| | | | | | | || |||| | Sbjct 9036473 CAAAGAAATTCATAATTATGAGACATAAAATATCATACCTCAGATTTCAG-GGCTTCCTA 9036531 Query 36632 TCATTG-ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 || | || || || || ||| | || | || ||||| |||| || | || ||||| Sbjct 9036532 GTATAGAATGTCCTTGGAAATAGCTACCACCTCTTCTGTCAAAAAGGAACCTTCAGCCTT 9036591 Query 36691 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 ||| | || | ||| || ||||| ||| || ||||| | ||||| Sbjct 9036592 CTTAGAAATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAA 9036639 >seq13 Length=48154242 Score = 129 bits (142), Expect = 8e-25 Identities = 286/424 (67%), Gaps = 19/424 (4%) Strand=Plus/Minus Query 36181 CTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTT 36240 ||| ||||| ||||| | ||| ||||||| ||||| || ||||| || | | || || Sbjct 23470804 CTCATCTCTGCTAATAAGTTCACTGGAAAATGTGAGACCAGGCATCAGCCATCATTTCTT 23470745 Query 36241 AAGCCAAAATATG--GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 36298 |||||| ||||| || ||||| || ||||||| ||| ||| |||| || |||||| Sbjct 23470744 AAGCCAGAATATACTGATGCAAAAGAACCAGAAAGGAAGATTTCTTCCACATTAGCAAAG 23470685 Query 36299 GCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCC 36358 || | | |||| || || | ||| | ||||| || || |||| | Sbjct 23470684 GCTACATCATGCTCTTCACAAATAG-ACTTTT---TATCCTGATT----CCAAATCTGTT 23470633 Query 36359 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTA 36418 ||||| || ||||||||||| | || | |||| |||| | | | |||||| || | Sbjct 23470632 TTCTTCTTCACACAAGGCATCATTTCAGTGCCATTGAAGATAAATTCTTTTTCTTTGGAA 23470573 Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 | |||| ||| ||| | | ||| |||||| | ||||| || ||| | ||||| Sbjct 23470572 TTTTTA----GTGTGATAATAAGGAAACTGTACATTACAGAATGTATTTTTCCTATGGCA 23470517 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 36538 ||||| ||||| |||||||| || || ||||| || | |||| | |||| | | Sbjct 23470516 ATTTGGAATCCATAGAAACAGTGGGCTTCTGTAATTTGAATTTCTTGGCTAAATTGCTTC 23470457 Query 36539 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 36598 | || |||||| | ||| | |||| |||| |||| |||| |||||| |||| Sbjct 23470456 ACCAATTTTTCACGTATTATGCTATCAC---CTGCTAAAA--GCCAGAACATGTGCTATA 23470402 Query 36599 AAAT 36602 |||| Sbjct 23470401 AAAT 23470398 >seq87 Length=7156779 Score = 125 bits (138), Expect = 9e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | ||||||||||||| ||||| |||||||| |||| Sbjct 718051 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTTAGAATGCATGTTTTCTGTGGC 718110 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 | ||| || || |||||||| | | || ||||| || |||||| | ||||| ||| Sbjct 718111 AACTTGGAAGCCATAGAAACAGCACACTTCTGTAATTTGAACTTCTTGGCTAAATCATTC 718170 Query 36538 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 36597 | ||||||||||| ||| || ||||| |||||||| || |||| ||| | ||| Sbjct 718171 CACCAAATTTTCATTTGTTATGCCATCACTTGCTGCAAAGAAAGCCAGAACAAGCAATAT 718230 Query 36598 AAAATAT 36604 ||||||| Sbjct 718231 AAAATAT 718237 >seq4 Length=67649338 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | Sbjct 16418169 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 16418110 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 16418109 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 16418050 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 16418049 CTGTTTCTTACACCATA 16418033 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || ||| |||||||| |||||||| |||||||||||||| | || | ||| |||| || Sbjct 16406669 CTCCACCCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCG 16406610 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || ||||| |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 16406609 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 16406550 Query 66176 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 ||||||| ||| || || | ||||||| || Sbjct 16406549 AGGTTCCAGGTAAATAGCAAATGCTCCAGGACG 16406517 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || |||||||| || |||||| ||| | || || || ||||| || | Sbjct 16420953 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 16420894 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| ||| || |||||||||||||| || || || ||||| |||||||| | | || | Sbjct 16420893 TCAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCTGCTGCCATTTTGAGAACAGTTT 16420834 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||| ||||||| | |||||| || || |||| Sbjct 16420833 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTAAGGTCATCAGGAA 16420783 Score = 105 bits (116), Expect = 9e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || ||||| || || | | Sbjct 16395537 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAGA 16395478 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||||||| || | Sbjct 16395477 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAGAGTATCTA 16395418 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || |||||| | |||| |||||||| || ||||| Sbjct 16395417 GTTCCACTGTGGTAACTCCACTGTATAAGCCTTGGATTACTTTCAT 16395372 >seq7 Length=60492774 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 54099246 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 54099305 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| ||||| || || || ||||||| Sbjct 54099306 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 54099365 Query 36300 C 36300 | Sbjct 54099366 C 54099366 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 ||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 54101125 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 54101184 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||| || || |||||||| | || || ||||| || |||||| | |||||| || Sbjct 54101185 ATTTGGAAGCCATAGAAACAGCGTGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTC 54101243 >seq19 Length=38427206 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| ||||| || ||||| || || | ||| || Sbjct 3916227 TCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCTTT 3916286 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 | ||| ||||| | ||||| ||||| || |||||||||||||| || || ||||||||| Sbjct 3916287 AACCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCA 3916346 Query 36302 ATAAGTCTCTCTCC 36315 | | ||| || || Sbjct 3916347 ACCACTCTTTCCCC 3916360 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| ||||||| || ||||||| ||||| ||||||||| ||||| || ||| | Sbjct 3927091 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGGG 3927150 Query 36716 TATTGAATTGGAAAAATAACAAATC 36740 || || ||||||||||| ||||||| Sbjct 3927151 TACTGGATTGGAAAAATGACAAATC 3927175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658053152412120