Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq11 145 7e-30 seq13 86.0 5e-12 >seq11 Length=52463945 Score = 145 bits (160), Expect = 7e-30 Identities = 130/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 20990 CAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGG 21049 ||||||||||| ||| || |||| || || || ||||| |||||||||||||| || || Sbjct 43836509 CAGGCCCGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCGATGTTGAAGGG 43836450 Query 21050 GACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGC 21109 || || ||||||||||| | |||||||||||||||||||||||||||||||| | Sbjct 43836449 CACGCCCAGGCCCATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCAC 43836390 Query 21110 CACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||||| ||||| || | | || || ||||| || |||||| Sbjct 43836389 CACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATC 43836347 >seq13 Length=48154242 Score = 86.0 bits (94), Expect = 5e-12 Identities = 167/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||||| ||| || |||| ||| || ||||| || || | ||||| | ||| Sbjct 3963785 AGCTGAATTTTCAGTGGCTCAATGTGATTCAGGTAAAAATGTGCATT-CCCAAAGAATGC 3963843 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACG-TCAGGAGGGCGTA 21031 | ||||| | | |||| |||||| ||| | |||| || | | || ||||| || Sbjct 3963844 ATAAAGTTATCTGACTGCAGGTCCGTGATGTGTGTAATCATGTAAGGTAAGCAGGGCATA 3963903 Query 21032 GCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCA 21091 || ||||||| || || || || | ||||||| | | ||||| ||||||||| || Sbjct 3963904 GCACTCGATGTTGAAAGGCACGCCCAAGCCCATGACTCCTGACCTTTGGTACAGCCAACA 3963963 Query 21092 GGACAGCTCCCCCCGAGCCAC-GTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCA 21150 |||||||||||| | ||| ||| ||||| || || | || || ||||| || ||| Sbjct 3963964 GGACAGCTCCCC---ATTCACTGTAGAACTGGCAGAAGGCATGGCATGGAGGCAGCACCA 3964020 Query 21151 TC 21152 || Sbjct 3964021 TC 3964022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427700179778640