Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq161 273 2e-68 seq67 188 7e-43 seq58 187 2e-42 seq7 132 5e-26 seq12166 109 5e-19 seq87 96.9 3e-15 >seq161 Length=830332 Score = 273 bits (302), Expect = 2e-68 Identities = 605/900 (67%), Gaps = 38/900 (4%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13582 ||||| | | |||| || | |||| |||||| | || | || || || || ||||| | Sbjct 529769 TAAAAGTTAGCATCCAAGGTAAAAGAATTATC-TGTTGGATTCGACATCACTCCCATCCT 529827 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| | | ||||| || |||||||||||||| || ||||| ||||| ||||| || Sbjct 529828 CTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTC 529887 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| |||||||||||| | | || || || | | | || || || | | | Sbjct 529888 CATAAAGTCAAATGGATTTTCTACTTTGAAAACCTTGTTAAAGCCCAGCTCCAGCATAAG 529947 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||||| || | ||| ||||| || || ||| ||| |||||||| || ||||| || Sbjct 529948 CCTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCTT 530007 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 |||| | | || | || | | |||||| | ||||| | | ||||| | Sbjct 530008 CTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCAT---TGATAATTGT 530064 Query 13823 TG-TAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | | || |||| | || || | || ||||| || || | || ||||| Sbjct 530065 TTCTTTTACTCTCTGCTCTGATGGTTTGTGCAGCAGGTGTTTGAACATCAGGCAGGCAAA 530124 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 ||||| || | |||||||||| | ||||||||||| || |||||||| | || ||||| Sbjct 530125 GTCACAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 530184 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 || ||||||||| || | ||| |||||||| |||||||| Sbjct 530185 CAGTCCTCGTTTCTTGA--------------GCA---------GAAAAGAAGATTCCCTC 530221 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 || |||||||| |||| | ||||||||| | | || | ||||| | ||| | Sbjct 530222 CACAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAACG 530281 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| || | ||| || || | | || ||||||| |||| ||||| || | | | Sbjct 530282 CAAGGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATTGAAGAGAAA 530341 Query 14120 TTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 |||| | ||||| ||| || |||||| || |||||||| | |||||||||||||| Sbjct 530342 TTCCCTTTCTTTGGAGTCTTT--AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAA 530399 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT 14237 |||||||||||||| || || || || ||||| || | | ||||| | ||| ||| Sbjct 530400 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACT 530459 Query 14238 TCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297 || | ||||| || ||||||| ||||| ||||| |||||||| || ||| | || Sbjct 530460 TCTTGGCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGCAGAGAAA 530519 Query 14298 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGATAA 14356 |||| | || ||||| ||| || ||| || || || ||| | | || | Sbjct 530520 GCCAGAAAGTGGGATATAAAATATCATTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA-AT 530578 Query 14357 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14416 ||| | | |||| | || || || |||||||||| ||| ||||||| ||| |||| Sbjct 530579 GTCCCT-GGAAGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTACACAT 530637 >seq67 Length=10555288 Score = 188 bits (208), Expect = 7e-43 Identities = 482/721 (67%), Gaps = 16/721 (2%) Strand=Plus/Minus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || |||| | || |||||||| || ||||| || || | || || |||||| Sbjct 3668887 TGATACTCTGAAACT-TGTTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCC 3668829 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTAA 13702 ||||||||||| |||||| || | ||| || || | | || || ||||| | ||||| Sbjct 3668828 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTT-TGAGAATCCAAGTTCCACAAGTAA 3668770 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| ||||| | ||| |||||||| || ||| ||| |||| ||||| | || || Sbjct 3668769 TCTTTCAGCTACAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCC 3668710 Query 13763 TACAGG-AATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 || || || | | || ||||||| || | || || ||||| | | | ||| | Sbjct 3668709 AACTGGCAAGTCTTCTG-TTAAAAACTCCTGCTCAATTTTGACAGCAT---TAACAATGA 3668654 Query 13822 TTGTAATAATC----TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13877 | | | | || | |||| || | || | | ||| |||| || ||| Sbjct 3668653 TCTCCCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCA 3668594 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 || ||| | |||| | |||||||| | || || || || ||||||| | ||| || Sbjct 3668593 AAGTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGG 3668534 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997 || |||| || |||||||| || || |||||||| || || || ||||| ||||| Sbjct 3668533 ATGGGACCTCTCTTCTTTAACCAGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCT 3668474 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14057 || || ||| | || | | || ||| ||||| | | ||| | | | ||||||| Sbjct 3668473 TCCACAGCACTGATGGCCACCACTCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCAT 3668414 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 ||||| || | |||||| |||| | |||||||| ||| |||||||||||| Sbjct 3668413 CACAGGGCCCAGTCTGTTTTTTTCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAA 3668354 Query 14118 TA-TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14176 | |||| | |||| | || | | || ||||| || || || || || || | || Sbjct 3668353 AATTTCCCTTTCTTGGGATCTCTGATTCTA-GTATCTATTAGCAAACTGTATATCTTTGA 3668295 Query 14177 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTAC 14236 ||| | || | || || ||||||||||| || || | ||| || || ||| || Sbjct 3668294 GTGAACATTCTTTATGAGAATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGCAC 3668235 Query 14237 TTCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14295 ||| || | ||| || || ||||||||||||| | | |||||||| | |||||||| Sbjct 3668234 CTCCTGACT-AAAGCTCTCCACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAAAA 3668176 Query 14296 A 14296 | Sbjct 3668175 A 3668175 >seq58 Length=13050397 Score = 187 bits (206), Expect = 2e-42 Identities = 522/782 (67%), Gaps = 27/782 (3%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13582 || |||||| |||| || | |||| ||| | | || | || || || | ||||| | Sbjct 9035716 TAGAAATCAGCATCCAAGGTAAAAGAATTCCC-TGTTGGATTTGACATCTCTCCCATCCT 9035774 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| |||| ||| | || |||||||||||| | || |||| |||| ||||| || Sbjct 9035775 CTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCT-GTGAAATATTCTC 9035833 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| ||| |||||||| | | || || || | | || || | | || ||| Sbjct 9035834 CATAAAGTCAGATGGATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCT-TCATCATAA 9035892 Query 13703 TC-TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 | | || || | || |||||||| || ||| ||| || ||||| || | | | Sbjct 9035893 GCCTGTCTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTCATCCCAGTGAACT 9035952 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 | ||||| | | | | || || | ||||| ||||| | | || |||| Sbjct 9035953 TCACAGGCAAGGCCTCCATGAGGAACTCCTGTTCTAAGCTGACAGCAT-TGATA-AATAT 9036010 Query 13822 TTGTAATAATCTCAT-TAGAA-GGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 || | || |||| | || || | | || ||||| || || | || ||| | Sbjct 9036011 TTCTTTTACTCTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAGA 9036070 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 |||||| | | ||||||||||| ||||||||||| | |||| | || || ||||| Sbjct 9036071 GTCACAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAACT--TAGGCCAGGCAT 9036128 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 |||||| | ||| || ||| | ||||||| |||| || | | ||||| |||| || Sbjct 9036129 CAATCCCCATTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTTTCCTTC 9036188 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 || || ||||| |||| | | ||||| | | |||| ||||| | ||||| | Sbjct 9036189 CACAGCGGCAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCCCCAATCCAATG 9036248 Query 14060 TCTAGCCC--ATTCAGAtttttttttA-ATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 | || || ||| | || || |||| |||| | ||||||||||| ||||| || | Sbjct 9036249 -CAAGACCTAATTTACTTTCTTCTTTACATAAGGT--ATTGTTTCAATGGCATTGAAGAG 9036305 Query 14117 ATATTCCTTCTCTTTAGTACTTGAAATGTAT--GTATCAATAAGTAAGCTATACATTTCA 14174 | ||||| | ||||| ||||| | | || |||||||| | |||||||||||| Sbjct 9036306 AAATTCCCTTTCTTT-------GAAATCTTTAAGTGTCAATAAGGAGACTATACATTTCA 9036358 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 | |||| ||||||||| || || || || |||| || || | |||| | ||| Sbjct 9036359 CAATGTA-GTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTGA 9036417 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 |||||| | |||| || ||||||||||||| | ||| |||||||| |||||||| Sbjct 9036418 ACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAG 9036477 Query 14295 AA 14296 || Sbjct 9036478 AA 9036479 >seq7 Length=60492774 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 54099246 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 54099305 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||||| ||||| || || |||||||| |||||||| || |||||||| | Sbjct 54099306 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 54099365 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 54099366 CTACAACACGTTCTCC 54099381 Score = 109 bits (120), Expect = 5e-19 Identities = 109/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13582 ||||| ||| |||| || | |||| |||||| | || | || || || || ||||| | Sbjct 54097690 TAAAAGTCAGCATCCAAGGTAAAAGAATTATC-TGTTGGATTCGACATCACTCCCATCCT 54097748 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||| ||||| ||||| || Sbjct 54097749 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTC 54097808 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 54097809 CATAAAGTCAAATGGATTT 54097827 >seq12166 Length=2209 Score = 109 bits (120), Expect = 5e-19 Identities = 109/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13582 ||||| ||| |||| || | |||| |||||| | || | || || || || ||||| | Sbjct 2057 TAAAAGTCAGCATCCAAGGTAAAAGAATTATC-TGTTGGATTCGACATCACTCCCATCCT 2115 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||| ||||| ||||| || Sbjct 2116 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTC 2175 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 2176 CATAAAGTCAAATGGATTT 2194 >seq87 Length=7156779 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 |||||| || |||||||| | |||||||||| ||| || |||||||| | || | || Sbjct 718057 AATGTAAGTGTCAATAAGGAGACTATACATTTTAGAATGCATGTTTTCTGTGGCAACTTG 718116 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAA 14260 || ||||| || || | |||| | ||| ||||| | ||||| ||| |||| Sbjct 718117 GAAGCCATAGAAACAGCACACTTCTGTAATTTGAACTTCTTGGCTAAATCATTCCACCAA 718176 Query 14261 ATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 ||||||||| ||| |||||||| |||||||| || |||| Sbjct 718177 ATTTTCATTTGTTATGCCATCACTTGCTGCAAAGAAAGCCA 718217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479640791446200