Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq161 246 3e-60 seq67 197 1e-45 seq58 158 1e-33 seq7 129 6e-25 seq82 107 2e-18 >seq161 Length=830332 Score = 246 bits (272), Expect = 3e-60 Identities = 599/900 (67%), Gaps = 38/900 (4%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13370 ||||| | | |||| || | |||| |||||| | || | || || || || ||||| | Sbjct 529769 TAAAAGTTAGCATCCAAGGTAAAAGAATTATC-TGTTGGATTCGACATCACTCCCATCCT 529827 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| | | ||||| || ||||| |||||||| || ||||| ||||| ||||| || Sbjct 529828 CTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTC 529887 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || ||||||||| | | || || || | | | || || || | | | Sbjct 529888 CATAAAGTCAAATGGATTTTCTACTTTGAAAACCTTGTTAAAGCCCAGCTCCAGCATAAG 529947 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||||| || | ||| ||||| || || ||| ||| |||||||| || ||||| || Sbjct 529948 CCTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCTT 530007 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 |||| | | || | || | | |||||| | ||||| | | | || | | Sbjct 530008 CTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCATTGATAATTGTT-T 530066 Query 13611 CTTAATAATGTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 13668 ||| || | || | || || | || ||||| || || | || ||||| Sbjct 530067 CTTT-TACTCTCTGCTCTGATGGTTTGTGCAGCAGGTGTTTGAACATCAGGCAGGCAAAG 530125 Query 13669 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13728 ||||| || | |||||||||| | ||||||||||| || |||||||| | || |||||| Sbjct 530126 TCACAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 530185 Query 13729 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 13788 | ||||||||| || | |||| ||||||| |||||||| Sbjct 530186 AGTCCTCGTTTCTTGA-----------GCAG------------AAAAGAAGATTCCCTCC 530222 Query 13789 ACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTT 13848 || |||||||| |||| | ||||||||| | | || | ||||| ||| | Sbjct 530223 ACAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAACGC 530282 Query 13849 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGT 13908 ||||| || | ||| || || | | || ||||||| | || |||||||| | | | Sbjct 530283 AAGGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATTGAAGAGAAAT 530342 Query 13909 TCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 13966 ||| | ||||| ||| || |||||| || |||||||| | |||||||||||||| | Sbjct 530343 TCCCTTTCTTTGGAGTCTTT--AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 530400 Query 13967 GTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14026 |||||||||| || || || || || ||||| |||| | ||||||| ||| || | Sbjct 530401 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTT 530460 Query 14027 CCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086 | | ||||| || |||| || ||||| || || |||||||| || ||| | || | Sbjct 530461 CTTGGCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGCAGAGAAAG 530520 Query 14087 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA- 14145 ||| | || ||||| ||| || ||| || || || ||| | ||| || Sbjct 530521 CCAGAAAGTGGGATATAAAATATCATTCCTCAGGCTTCAGGGCTTCCCAGT--GCTGAAT 530578 Query 14146 -TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204 ||| | | |||| | || || || |||||||||| ||| ||||||| ||| |||| Sbjct 530579 GTCCCT-GGAAGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTACACAT 530637 >seq67 Length=10555288 Score = 197 bits (218), Expect = 1e-45 Identities = 484/721 (67%), Gaps = 16/721 (2%) Strand=Plus/Minus Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || |||| | || ||||| || || ||||| || || | || || |||||| Sbjct 3668887 TGATACTCTGAAACT-TGTTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCC 3668829 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAATAA 13490 |||||||| || |||||| || | ||| || || | | || || ||||| | | ||| Sbjct 3668828 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTT-TGAGAATCCAAGTTCCACAAGTAA 3668770 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| ||||| | ||| |||||||| || ||| ||| |||| ||||| | || || Sbjct 3668769 TCTTTCAGCTACAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCC 3668710 Query 13551 TACAGG-AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 || || || | | | |||||||| || | || || ||||| | | | ||| | Sbjct 3668709 AACTGGCAAGTCTTCT-GTTAAAAACTCCTGCTCAATTTTGACAGCAT---TAACAATGA 3668654 Query 13610 TCTTAATAA----TGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13665 ||| | | | || | |||| || | || | | ||| |||| || ||| Sbjct 3668653 TCTCCCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCA 3668594 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 || ||| | |||| | |||||||| | || || || || ||||||| | ||| || Sbjct 3668593 AAGTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGG 3668534 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 || |||| || |||||||| || || ||||| || ||||| || ||||| ||||| Sbjct 3668533 ATGGGACCTCTCTTCTTTAACCAGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCT 3668474 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCAT 13845 || || ||| | || | | || ||| ||||| | | ||| | | || ||||||| Sbjct 3668473 TCCACAGCACTGATGGCCACCACTCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCAT 3668414 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 ||||| || | |||||| |||| | |||||||| |||||||| |||||| Sbjct 3668413 CACAGGGCCCAGTCTGTTTTTTTCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAA 3668354 Query 13906 TGTT-CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964 || || | |||| | || | | || ||||| || || || || || || | || Sbjct 3668353 AATTTCCCTTTCTTGGGATCTCTGATTCTA-GTATCTATTAGCAAACTGTATATCTTTGA 3668295 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024 ||| | || | ||| || ||||||||||| ||||| | ||| ||||| ||| || Sbjct 3668294 GTGAACATTCTTTATGAGAATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGCAC 3668235 Query 14025 CTCC-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083 |||| || | ||| || || |||| |||||||| || | |||||||| | |||||||| Sbjct 3668234 CTCCTGACT-AAAGCTCTCCACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAAAA 3668176 Query 14084 A 14084 | Sbjct 3668175 A 3668175 >seq58 Length=13050397 Score = 158 bits (174), Expect = 1e-33 Identities = 308/448 (69%), Gaps = 18/448 (4%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || ||||| || || | || ||| | |||||| | | ||||||||||| ||||||||| Sbjct 9036045 AGGTGTTTGAACATCAGGCAGGCAGAGTCACAAAGTAAACCCTCATCTCTGCTAATAAGT 9036104 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || | |||| ||| || ||||||||||| | ||| || ||| | ||||||| | Sbjct 9036105 TCACTGGAAA--CTTAGGCCAGGCATCAATCCCCATTTCTTGAACTAGAATATTGATTCA 9036162 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || | | ||||| |||| || || || ||||| |||| | | ||||| | Sbjct 9036163 AAAGAAACATAGAAGAAGTTTCCTTCCACAGCGGCAAAGGCTACAACACATTCTCTGTAG 9036222 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCC--ATTCAGAtttttttttA-ATAAAA 13878 | |||| ||||| ||||| | | || || ||| | || || |||| |||| Sbjct 9036223 GTAGCTTCTTTGTCCCCAATCCA-ATGCAAGACCTAATTTACTTTCTTCTTTACATAAGG 9036281 Query 13879 TCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAA--TGTATG 13936 | |||||||| || |||||||| | | |||| | ||| |||||| | || | Sbjct 9036282 T--ATTGTTTCAATGGCATTGAAGAGAAATTCCCTTTCT-------TTGAAATCTTTAAG 9036332 Query 13937 TATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCAT 13996 | |||||||| | |||||||||||| | |||| |||||| || || || || || ||| Sbjct 9036333 TGTCAATAAGGAGACTATACATTTCACAATGTA-GTTTTCCATGGCAATTTGGAAGTCAT 9036391 Query 13997 AAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCAT 14056 | ||||| | |||||| ||| || ||| | |||| || |||| ||||||| Sbjct 9036392 AGAAACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCAT 9036451 Query 14057 TAACAATACCATCACTAGCTGCAAAAAA 14084 | | || |||||||| |||||||| || Sbjct 9036452 TTATTATGCCATCACTTGCTGCAAAGAA 9036479 >seq7 Length=60492774 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 54099246 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 54099305 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||||| || || || || |||||||| |||||||| || |||||||| | Sbjct 54099306 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 54099365 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 54099366 CTACAACACGTTCTCC 54099381 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 54101130 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 54101189 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 54101190 GAAGCCATAGAAACAGCGTGCTTCTG 54101215 >seq82 Length=7573503 Score = 107 bits (118), Expect = 2e-18 Identities = 361/558 (65%), Gaps = 17/558 (3%) Strand=Plus/Plus Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723 |||| ||| | || | ||||| ||||| || |||||||| || |||||||| | | | Sbjct 1078425 CAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCTAG 1078484 Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTC 13783 |||||| | || | || |||||||| || ||||| || |||||||| ||| Sbjct 1078485 GCATCAGTTCTTATATT--------AAATATTGATGCAAATGAGCCAGAAAAGAAGATTT 1078536 Query 13784 CCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCC 13843 | | | | || || ||| |||| || | | |||| ||||| ||| Sbjct 1078537 CTCCCATAGTGGCCAAGACTACAGCACGTTTTCTGTAGGTAGCTTCTTTGTCCCCAGTCC 1078596 Query 13844 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 | || || || | ||| || || | || ||| |||| || |||||| | | Sbjct 1078597 AACACAAGGCACAATCTGCTTTCTTCTTCACCCAAGACATCATTTCAATGGCATTGGAGA 1078656 Query 13904 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 13963 | |||| | |||| | | || |||||| | |||||||| | | ||| ||||||| Sbjct 1078657 GAAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCAG 1078716 Query 13964 AGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14023 | ||||||||||| || || || || || ||| | ||||| | |||||| ||| | Sbjct 1078717 AATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGAA 1078776 Query 14024 CCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC-TGCAAAA 14082 |||| | ||||| | ||| |||||| | | || ||||||| || | |||| Sbjct 1078777 CCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACATGCGTTCAAAG 1078836 Query 14083 AATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGG 14140 || || || |||| | ||||| ||| || ||| || || | ||| | | Sbjct 1078837 AAAGCTAGAACATGTGAT--ATAAAATATCATTCCTCAGGCTTCAGGGCCTCCCAGT--G 1078892 Query 14141 CTAA--ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14198 || | ||||| |||||||| || || || ||||||| || ||| | ||||| || Sbjct 1078893 CTGACTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGAAGCCTCGGCTTTCTT 1078952 Query 14199 ATACATTACCCATATTTC 14216 ||||||| ||| || || Sbjct 1078953 ATACATTTGCCAAATATC 1078970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478501798538520