Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq83 82.4 6e-11 >seq83 Length=7591375 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||| || | ||| |||||| || | ||||| ||||||| || || |||| || Sbjct 414022 CACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTC 413963 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || || ||||||||||| ||||| | ||| || |||| || | || || || || Sbjct 413962 CAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCTTG 413903 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | | ||||| | ||| ||||| | | ||| || || | || || || || Sbjct 413902 GATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 413843 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCT 43114 || || || || ||||| || || |||||| ||| Sbjct 413842 GCCCGTCAGGGTCTTCACGAAGATCTGCATTATCT 413808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381302004979494