Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq67 215 4e-51 seq161 210 2e-49 seq19 102 7e-17 >seq67 Length=10555288 Score = 215 bits (238), Expect = 4e-51 Identities = 484/719 (67%), Gaps = 10/719 (1%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || |||| | || ||||| || |||||||| || ||||| ||||| |||||| Sbjct 3668887 TGATACTCTGAAACT-TGTTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCC 3668829 Query 12923 ATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAAT 12982 |||||||| || ||||||| | | | ||| | || | ||| | | ||| Sbjct 3668828 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCACAAGTAAT 3668769 Query 12983 CTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTT 13042 || ||||| ||||| || || ||||| |||| ||| |||||||||| | || | Sbjct 3668768 CTTTCAGCTACAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCA 3668709 Query 13043 ACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCT 13102 || |||| ||||||||||||| | | || || | || || | | || || || Sbjct 3668708 ACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTCC 3668649 Query 13103 CTTATTACGTTCTCTAATGGAGG---ATTTGATAGATGCTTAAACATCATACATGCAAAA 13159 || | | || ||| || || |||| || | || |||||| | || ||||| Sbjct 3668648 CTCAC--CCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAAG 3668591 Query 13160 TCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATA 13219 ||| || | | | |||||||||| | || ||||| || ||||||| || || || || Sbjct 3668590 TCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGATG 3668531 Query 13220 AGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCA 13279 | |||| || || | ||| || ||||||||||| || || || || || |||||||| Sbjct 3668530 GGACCTCTCTTCTTTAACCAGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCC 3668471 Query 13280 ACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT-CTATCCACTT 13338 || || | || | || ||||| ||| | ||| ||| || ||| ||||||| Sbjct 3668470 ACAGCACTGATGGCCACCACTCTTTCCCCAAAAGTAGACTTTCTA-TCTGCTATCCATCA 3668412 Query 13339 TCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATA 13398 |||||||| || ||||| |||||| | ||| ||| ||||| ||||||||| | Sbjct 3668411 CAGGGCCCAGTCTGTTTTTTTCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAAAA 3668352 Query 13399 AtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATG 13458 || || ||| ||| || ||||||||| | || || || || | ||| || Sbjct 3668351 TTTCCCTTTCTTGGGATCTCTGATTCTAGTATCTATTAGCAAACTGTATATCTTTGAGTG 3668292 Query 13459 AATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG-AACTT 13517 || ||| | || ||||| |||||||| ||||| | ||||||||| || || | || Sbjct 3668291 AACATTCTTTATGAGAATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACCTC 3668232 Query 13518 CGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaa 13576 | || | ||| || || | || ||||| || | | || ||||| | ||||||||| Sbjct 3668231 CTGACT-AAAGCTCTCCACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAAAAAA 3668174 >seq161 Length=830332 Score = 210 bits (232), Expect = 2e-49 Identities = 500/757 (66%), Gaps = 43/757 (6%) Strand=Plus/Plus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||| ||||| || ||| | ||||| | || ||||| || ||||| ||||| || || Sbjct 529807 ATTCGACATCACTCCCATCCTCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTT 529866 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT-----TCGAACAATAGTAT 12955 ||||||| |||||||| |||||||| || || ||||||| | ||| | Sbjct 529867 CCCTTCTAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTTTGAAAACC----- 529921 Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 || ||| | || | || || | | || || || ||||| || |||||||| ||||| Sbjct 529922 TTGTTAAAGCCCAGCTCCAGCATAAGCCTATCTGCCACAAAGTCAATGTACTGCTTCATC 529981 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT 13075 ||| || ||||| || |||| || |||||| |||||||| | || | |||| Sbjct 529982 AAAGTGCAATTCATCCCAATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCT 530041 Query 13076 ATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT--- 13132 || || || | ||||| | | ||| ||| | | |||| |||| |||| Sbjct 530042 ATTGTGACAGCATTGATAATTGTTTCTTTTACTCTCTGCTCTGATGG----TTTGTGCAG 530097 Query 13133 -AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAG 13191 || || || ||||||| || ||||| |||||||| || || |||||| | || || || Sbjct 530098 CAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCATCTTTGCTAATAAG 530157 Query 13192 CTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGC 13251 || || |||||||| || || ||||| || |||||||| || | || Sbjct 530158 TTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGA--------------GC 530203 Query 13252 AAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCAT 13310 | ||||| || ||||| || || || ||||| |||| |||| | ||| |||| Sbjct 530204 A---------GAAAAGAAGATTCCCTCCACAGCAGCAAAGGCTA-CAACACGTTCTCCAT 530253 Query 13311 ACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGT 13370 | ||| | ||| | | ||| | |||||| | ||||| | || || || Sbjct 530254 AGGTAGCCTCTTTGTCCCCAATCAAACGCAAGGCCCAATCGGCTTTCTTCTTCACACAAG 530313 Query 13371 TCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTAT 13430 ||| || | || || || || | | | | |||| || |||| ||| ||||| | Sbjct 530314 GCATTGTTACAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAGTCTTTAATGTAAGTGT 530373 Query 13431 CTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAA 13490 | || | | ||||||||||| ||||| || |||||||| || |||||||| ||||| | Sbjct 530374 CAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGA 530433 Query 13491 AACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAA 13550 ||| | || |||| | |||||||| | ||||| || | || || || || | Sbjct 530434 AACTGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCAAATTCTCATTTA 530493 Query 13551 CTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 |||| || ||||| || ||| | ||||| || | ||| Sbjct 530494 CTATGCCATCACTTGCCGCAGAGAAAGCCAGAAAGTG 530530 >seq19 Length=38427206 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || |||||||| || || ||||| || |||| || | Sbjct 3916225 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 3916284 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || |||||||| || || ||||| | Sbjct 3916285 TTAACCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 3916344 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 3916345 CAACCACTCTTTCCCC 3916360 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 12801 TTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACATT 12859 |||||||||| ||| | || || |||| ||| || || | || |||||| | | Sbjct 3902799 TTTAAAAATCTGCATCCAAAGTGAAGACATTATCTGTGGTT-TCTGCCATAACGGCAAAA 3902857 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || ||||| ||| ||||| || |||||||| |||||||| ||||| ||| Sbjct 3902858 CGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTT 3902917 Query 12920 TCCATAAAATCGAAAGGATTTT 12941 ||||||||||| || ||||||| Sbjct 3902918 TCCATAAAATCAAAGGGATTTT 3902939 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| || ||||||||||| ||| |||||||||| || || | Sbjct 3909479 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCATCCCAATGAGG 3909538 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 || |||| |||||||||||||| Sbjct 3909539 CCAACTGGCAAGGCTTCTGTTAAAAA 3909564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430906011467286