Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq25 192 1e-43 seq2 176 1e-38 seq91 168 2e-36 seq138 165 2e-35 seq161 159 8e-34 seq16 159 8e-34 seq9 158 3e-33 seq67 152 1e-31 seq4 147 5e-30 seq1 123 6e-23 seq11 120 7e-22 seq34 102 2e-16 seq151 96.9 8e-15 seq30 96.9 8e-15 seq1035 91.5 3e-13 seq12166 89.7 1e-12 seq7 89.7 1e-12 seq1204 87.8 4e-12 >seq25 Length=31340621 Score = 192 bits (212), Expect = 1e-43 Identities = 174/218 (80%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | || || || |||||||| || |||||||| | ||| | Sbjct 4762693 AGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGT 4762752 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| || |||||||| || || || || ||||||||||| |||| ||| Sbjct 4762753 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTC-TTCC 4762811 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| |||||||||||||||| || || ||||| ||||| |||||| Sbjct 4762812 TTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTA 4762871 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| || ||||| ||||||||||| |||||||| Sbjct 4762872 TTAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 4762909 >seq2 Length=69027483 Score = 176 bits (194), Expect = 1e-38 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || |||| | || || || |||||||| || |||||||| | || | Sbjct 23646319 AGCCTCAGCACCTGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACACGGTACGT 23646260 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| || ||||||| || || || || ||||||||||| |||||||| Sbjct 23646259 CCATCTTCCAGTTGCTTATCAGCAAACATCAGTCTTTGATGATCAGGAGGAATTCCTTCC 23646200 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || ||||||||||||| ||||| ||||| ||||| | |||| Sbjct 23646199 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACCTCCATTGTA 23646140 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 |||||||| | ||||| |||||||| || ||||||| Sbjct 23646139 ATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCA 23646103 >seq91 Length=6382753 Score = 168 bits (186), Expect = 2e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | || || || |||| ||| | |||||||| | || | Sbjct 364185 AGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTCGTAGTCAGACAAGGTACGT 364244 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||||||||| || |||||||| || || || | ||||||||||| |||||||| Sbjct 364245 CCATCTTCTAGTTGCTTACCAGCAAAGATGAGACTTTACTGATCAGGAGGAATTCCTTCC 364304 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||| ||| ||||| |||||||||||||||| || | | ||||| ||||| || ||| Sbjct 364305 TTATTCTGGATCTTGGCTTTTACATTTTCTATAGTGTTGGAGGGTTCAACCTCGAGAGTA 364364 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || |||| ||||||| || |||||||| Sbjct 364365 ATAGTCTTCCCCATAAGGGTTTTTAAGAAAATCTGCAT 364402 >seq138 Length=1287892 Score = 165 bits (182), Expect = 2e-35 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| || | ||| || || || | || || |||||||| ||||| || ||||| | Sbjct 343403 CCCCTC--AGACGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAAA 343460 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 |||| | || ||||| | || || || ||||| || |||||||| || ||||| || | Sbjct 343461 GAGTACGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAA 343520 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | |||||||||||||| ||||| || || ||||| || | ||| || || || || |||| Sbjct 343521 TGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCT 343580 Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || ||||| ||||| || || || ||||| |||||||||||| Sbjct 343581 CCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 343630 >seq161 Length=830332 Score = 159 bits (176), Expect = 8e-34 Identities = 500/776 (64%), Gaps = 35/776 (5%) Strand=Plus/Minus Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 || || || ||| || |||||||| | |||| || || | ||| | |||||||| Sbjct 530557 AAGCCTGAGGAATGATATTTTATATCCCACTTTCTGGCTTTCTCTGCGGCAAGTGATGGC 530498 Query 268883 ATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGA 268942 || || || || ||| | || ||| || | ||||| || || ||| | |||||| | Sbjct 530497 ATAGTAAATGAGAATTTGGTGGAGCGATTTAGCCAAGAAGTTCAAATTACAGAAGCCCGC 530438 Query 268943 TGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTA 269002 |||| || || ||||| || || || ||||| || ||||| || ||||| ||||| | Sbjct 530437 AGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTT 530378 Query 269003 ATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGAACT 269062 || || ||||| || | || ||| |||| | || || || | | || ||| Sbjct 530377 ATTGACACTTACATTAAAGACTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGTAACA 530318 Query 269063 ATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAGCGCGCCT 269122 ||| ||||||| || ||| | || ||||| || | ||| || | | | || Sbjct 530317 ATGCCTTGTGTGAAGAAGAAAGCCGATTGGGCCTTGCGTTTGATTGGGGACAAAGAGGCT 530258 Query 269123 ---TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCT 269179 || |||||| | | || || ||||| ||||| || || || |||||||| Sbjct 530257 ACCTATGGAGAACGTGTTGTAGCCTTTGCTGCTGTGGAGGGAATCTTCTTTTC------- 530205 Query 269180 TTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAAC 269239 ||| | |||||| |||| || ||||| || | || || || || Sbjct 530204 --TGC--------------TCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAAT 530161 Query 269240 GAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAAT 269299 ||| | || |||| || || || |||||||| ||||| || || | | || | | Sbjct 530160 GAACTTATTAGCAAAGATGAGGGCTTACACTGTGACTTTGCCTGCCTGATGTTCA---AA 530104 Query 269300 TATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAA---TTATAGATTCAGCTGTT 269356 | || |||||||| || | | |||||| | |||| |||| || ||||| Sbjct 530103 CACCTGCTGCACAAACCATCAGAGCAGAGAGTAAAAGAAACAATTATCAAT---GCTGTC 530047 Query 269357 TCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGC 269416 | ||||| | || || || ||||| | || | || || || |||||| || Sbjct 530046 ACAATAGAACAGGCGTTCCTCACAGAAGCCTTGCCTGAGAAGCTAATTGGGATGAATTGC 529987 Query 269417 AAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTT 269476 | | ||||| | || ||| | || || | ||||| | || || | || ||| Sbjct 529986 ACTTTGATGAAGCAGTACATTGACTTTGTGGCAGATAGGCTTATGCTGGAGCTGGGCTTT 529927 Query 269477 AGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGT 269536 | || | || || |||||||| ||| |||||||||||||| ||| ||||||| Sbjct 529926 AACAAGGTTTTCAAAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTAGAAGGG 529867 Query 269537 AAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTC 269592 ||| |||| ||||| |||||| | ||| | || ||||||| ||||| || ||||| Sbjct 529866 AAGACTAACTTCTTTGAGAAGAGAGTAGGCAAGTATCAGAGGATGGGAGTGATGTC 529811 >seq16 Length=44863414 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || | ||||| || || || |||||||| | | |||||| | ||| | Sbjct 42573723 AGCCTCAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTACAT 42573782 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| || |||||||| || || || || ||||||||||| |||||||| Sbjct 42573783 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 42573842 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| |||||||||||||||| || || ||||| |||| || || Sbjct 42573843 TTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCCAGCATA 42573902 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||||| | ||||| |||||||| || |||||||| Sbjct 42573903 ACAGTCTTCCTCGTAAGGGTTTTTACGAAAATCTGCAT 42573940 >seq9 Length=54061371 Score = 158 bits (174), Expect = 3e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || |||||||| || || |||||||| ||||| | || || Sbjct 30845437 AAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 30845378 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || | || || ||||| || |||||||| || |||||||| || ||||||||||| Sbjct 30845377 TTCCAGCAGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATC 30845318 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || ||||| || | ||| || || | || | ||| || || ||||| Sbjct 30845317 CTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAGGGTGATAGT 30845258 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||| ||||| || || || | ||| |||||||||||| Sbjct 30845257 CTTGCCAGTCAGGGTCTTCATAAAGATCTGCATTTTG 30845221 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/216 (70%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| || || || || || ||||| || |||||||| ||| Sbjct 46314733 AGCCTCAGCACCAGATGAAAGGTGGACTCCTTTTGAATGTTGTAGTCAGACCAAGTATGT 46314792 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || | | | ||| || | || | || ||||||||||| |||||| | Sbjct 46314793 CCTTCTTCCTGT-GCTGACAAGCTAAGGTCAGGTTTTGCTGATCAGGAGGAATTCCTCCC 46314851 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 | |||||| ||||| || ||||||| ||||| |||||| || |||| |||| Sbjct 46314852 TCATCCTGGATCTTGGCCTTTACATATTCTATGGTATC-----CATCAACCTTGAGTGGG 46314906 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 ||||||| || | ||| || |||| || |||||| Sbjct 46314907 CTAGTCTTCCCTGAAAGGGTCTTTATGAA-ATCTGC 46314941 >seq67 Length=10555288 Score = 152 bits (168), Expect = 1e-31 Identities = 391/590 (66%), Gaps = 9/590 (2%) Strand=Plus/Plus Query 268702 ATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGC 268761 |||||| ||||||||||| ||| | ||||| |||| ||||| ||||||| || Sbjct 3668011 ATTTGTCATATTTCCAATTCAGTACCCCGATATTTGGAAAATGTATGAACAGGCACAGGC 3668070 Query 268762 TTCTTTTTGGACTGTAGAAGAAGTAGA-TCTGTCTTATGACTTAATAGATTGGAAAAATT 268820 || || ||||| | |||||| || || | | || | || | | | | ||| || Sbjct 3668071 ATCCTTCTGGACAGCAGAAGAGGTTGACTTTATCAAAGGATCTCCTTCACTAGAACAAGC 3668130 Query 268821 TAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTT---GCAGTTAGTG 268877 | ||| |||| || | ||| | ||| |||| | || |||||| ||| |||| Sbjct 3668131 TTAAATCAGATGAGAATTATTTTCTCTCTCATATCTTAGCTTTTTTTTTTGCAACCAGTG 3668190 Query 268878 ATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAG 268937 |||| | | || |||||| | || |||| || |||| ||||| || || | || | Sbjct 3668191 ATGGAAATGGAAATGAAAATTTGGTGGAGAGCTTTAGTCAGGAGGTGCAAGTTTCAGAGG 3668250 Query 268938 CCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTC 268997 | | ||||| || || || || || ||| | ||| |||| ||| |||| |||||| Sbjct 3668251 CTTGCTGTTTCTATGGTTTTCAAATTCTCATAAAGAATGTTCACTCAAAGATATACAGTT 3668310 Query 268998 TATTAATAGATACTTATAT-AGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 | ||||||||||| || ||| ||| ||| || |||| ||||| | | || Sbjct 3668311 TGCTAATAGATACTAGAATCAGA-GATCCCAAGAAAGGGAAATTTTTATTTAATGCAATT 3668369 Query 269057 AGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAG- 269115 | ||| ||| | || | |||||| | || ||||| ||| ||||||| ||||| Sbjct 3668370 AAAACAATGCCATACGTTAAGAAAAAAACAGACTGGGCCCTGTGATGGATAGCAGATAGA 3668429 Query 269116 --CGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCG 269173 | ||| || ||||| | || || | ||||| ||||| || ||||| || Sbjct 3668430 AAGTCTACTTTTGGGGAAAGAGTGGTGGCCATCAGTGCTGTGGAAGGAATTTTCTTCTCA 3668489 Query 269174 GGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTC 269233 || |||||||| ||||| || ||||| ||||| ||||| | || || ||| | || || Sbjct 3668490 GGATCTTTTGCTGCTATTTTCTGGTTAAAGAAGAGAGGTCCCATCCCTGGACTCACATTT 3668549 Query 269234 TCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 | || || |||| | ||| || |||| | | || ||||| ||||| Sbjct 3668550 TTCAATGAGCTGATCAACAGAGATGAAGAACTTCTCTATGACTTTGCTTG 3668599 >seq4 Length=67649338 Score = 147 bits (162), Expect = 5e-30 Identities = 164/218 (75%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || | ||||| | ||||| || |||||||| || |||||||||| | | | Sbjct 3346650 AGCCTTAGCCCAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGATAAA-TACAC 3346708 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| | ||| || |||| ||| ||||| | || |||| ||||| |||||||| Sbjct 3346709 CCATCTTCCATTTGCTTACCAGAAAAGATTAGTTTTTGCTGATTGGGAGGAATTCCTTCC 3346768 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| | ||||| |||||||||||||||| ||||| ||||| ||||| || | Sbjct 3346769 TTATCTTAGATCTTGGCTTTTACATTTTCTATAGTATCCAGTGGTTCAACCTCAAGCATG 3346828 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || |||| ||||||| || |||||||| Sbjct 3346829 ATGGTCTTCCCCATAAGGGTTTTTATGAAAATCTGCAT 3346866 >seq1 Length=90267253 Score = 123 bits (136), Expect = 6e-23 Identities = 108/132 (82%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| ||||| || |||||||| || || ||||| ||||||||||| | |||||| Sbjct 20659493 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG-AATCCTTCC 20659435 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || ||||||||||||| | || | |||||| ||||| || ||| Sbjct 20659434 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTC-CGAGGTTCAACCTCGAGCGTA 20659376 Query 104522 ATAGTCTTACCA 104533 |||||||| ||| Sbjct 20659375 ATAGTCTTCCCA 20659364 >seq11 Length=52463945 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 65771 AAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATC 65830 ||||| ||| || || |||||||||| | |||||||| |||||| ||| ||| Sbjct 319067 AAACTTCTCTTTGCCAAAATTAAATAACA-----CCAACATTTTTTCTATAATCTTCATC 319013 Query 65831 TATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCTAT 65890 ||| |||||||| ||||||||||| || || || || || ||||| | |||||||| Sbjct 319012 TATGACACCAGCTCCTACATCTATGAAATATTTTGCAGCCAACCCAGAATGTGGAGCTAT 318953 Query 65891 TCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTAAATACCAATTCTTTGTC 65950 ||| ||||| || || ||||| | | | |||||| || || | |||| || Sbjct 318952 TCTTCCATAGTACCCAGAAGGAAGAGCTGT-CTCAAAT--GTTTTCACTAGGGCTTTCTC 318896 Query 65951 CATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATATCCTGCAGCCCAC 66005 ||| ||| |||| ||||||| || || || || || ||||| ||||| |||||| Sbjct 318895 CATAGGTGGTACTTTATAATCATAGGCACTGTACAGGTCATAGCCTGCGGCCCAC 318841 >seq34 Length=22531781 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || |||| ||| | ||| | || ||||| |||| | ||| Sbjct 4178354 GTGGACTCCTTTTGAATGTTGTAGTGAGACAAAGTGCATCCATCTTCCAGTTTCCTGCCA 4178413 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| |||||||| || |||| |||||| || |||| | ||||||| |||| || ||| Sbjct 4178414 GCAAAGATTAGCCTTTGCTGATGAGGAGGAATGCCTTTTATATCCTGGGTCTTGGCCTTT 4178473 Query 104483 ACATTTTCTACGGTAT 104498 |||||||||| |||| Sbjct 4178474 ACATTTTCTATAGTAT 4178489 >seq151 Length=1038780 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 ||||||||||| |||||||| |||||||| ||||| ||||||| |||||||| || || Sbjct 749623 TGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTATATTTTCTATAGTGTCC 749564 Query 104501 CTAGGTTCTACCTCTAG--TGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 ||||| || || || || ||||||| || |||| ||||||| || ||||||| Sbjct 749563 GAGGGTTCAACTTCGAGCTAATATTAGTCTTCCCCATAAGGGTTTTTATGAAAATCTGCA 749504 Query 104559 TTTTG 104563 | ||| Sbjct 749503 TCTTG 749499 >seq30 Length=30016984 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || ||| || | | || || ||||||||||| || || || || Sbjct 13544524 ATGCCACCTCTCAGGTGAAGCACCAAGTATAGAGTGGATTCTTTCTGGATGTTGTAATCT 13544465 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | || || || || ||||| || ||||| || || ||| | |||||| Sbjct 13544464 GGGAGAGTGCGGCCATCCTCCAGCTGTTTACCTGCAAATATCAGATGCTGCT-ATCAGGT 13544406 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 | || || || | || |||| || ||||| ||||| || | ||| || || || || Sbjct 13544405 GAGATGCCCTCCATGTCTTGAAATTTCGCTTTGACATTCTCGATGGTGTCACTGGGCTCG 13544346 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || ||||| || || || || || ||||| |||||||| Sbjct 13544345 ACCTTGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 13544296 >seq1035 Length=9571 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 |||||||||||||| | ||| || |||||||| || | || ||||| ||||| || || Sbjct 1 GTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATA 60 Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || || || ||||| | || ||||| || | ||| || || ||| || || Sbjct 61 CCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCC 120 Query 104516 AGTGTAATAGTCTTACCAGT 104535 | || || ||||||||||| Sbjct 121 AAAGTGATGGTCTTACCAGT 140 >seq12166 Length=2209 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 269489 AACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTC 269548 || || |||||||| ||| |||||||||||||| ||| ||||||| ||| |||| ||| Sbjct 2202 AAAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTAGAAGGGAAGACTAACTTC 2143 Query 269549 TTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAAT 269608 || |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| Sbjct 2142 TTTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCGAATCCAACAGATAAT 2083 Query 269609 ATTTTCACTACAGATGCAGAATTCTAA 269635 ||| || ||||| || || ||| Sbjct 2082 TCTTTTACCTTGGATGCTGACTTTTAA 2056 >seq7 Length=60492774 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 269489 AACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTC 269548 || || |||||||| ||| |||||||||||||| ||| ||||||| ||| |||| ||| Sbjct 54097835 AAAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTAGAAGGGAAGACTAACTTC 54097776 Query 269549 TTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAAT 269608 || |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| Sbjct 54097775 TTTGAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCGAATCCAACAGATAAT 54097716 Query 269609 ATTTTCACTACAGATGCAGAATTCTAA 269635 ||| || ||||| || || ||| Sbjct 54097715 TCTTTTACCTTGGATGCTGACTTTTAA 54097689 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 |||||||| || |||||||| | ||| | || ||||||||||| || |||||||| || Sbjct 16090337 TTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCTAGTTGCTTACCAGCAAAGATC 16090396 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCT 104458 || || || ||||||||||| |||||| Sbjct 16090397 AGTCTTTGCTGATCAGGAGGAATTCCT 16090423 >seq1204 Length=7733 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | || | |||||| || ||||| || || || || |||||| Sbjct 7139 ATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 7080 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAAT 104430 |||||||||||||||||||| | ||| || |||||||| || Sbjct 7079 GATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGAT 7039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151183857417444