Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq13 114 1e-20 >seq13 Length=48154242 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| |||||||| ||||| ||||| | ||||| ||||| |||||| Sbjct 39520668 GGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTAGTGGAGGTGATGCCCCAGGCA 39520727 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || ||| | || || | || || ||||| || |||||||| || ||||||||||| Sbjct 39520728 GAGAACCACAGCCCAGATGTCAAGGAGCACGTGAACTCCCTGGGGGAGAAGCTGAAGACC 39520787 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | ||||| || || || ||||| Sbjct 39520788 CTCAGACTGCGGCTCCGGCGCTG 39520810 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 127379 AGCTTCAGGAAAGAGGCGTGTACAAGGCCATGAGTGAGTTTGACATATTCATCAACTACA 127438 ||||||| || | |||| | ||||| |||||||||||||||||||| ||||||||||||| Sbjct 39522858 AGCTTCAAGAGAAAGGCATCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 39522917 Query 127439 TCGAGACTTACATG 127452 | || | |||||| Sbjct 39522918 TAGAAGCCTACATG 39522931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429978175948616