Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 1e-12 >seq11 Length=52463945 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||| || |||| ||||||||||| || || || || || ||||| Sbjct 43833613 CATATCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAGACTGGGCCCAGGTC 43833554 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || |||| ||| || ||| |||||||||| ||| || |||||||| || Sbjct 43833553 CCCTTCTTGTCTGGTGGAGAATCCCAGGCCATCCAAAAAGCCTCGAGATCCATTGGCATC 43833494 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||| || || ||||| || || ||||| | |||||||| || Sbjct 43833493 CCAGATTTTCACTCCCTTGGAAGATAGTTCTTTAGCATTTGTGGATCC 43833446 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| || || || |||||||||||||| ||||| || || | |||||| Sbjct 43836493 GCAATCATGTAGGTAAGCAGGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATG 43836434 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || ||||||||||| ||||| || || ||||| | | |||||| ||||| || Sbjct 43836433 T-CACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCA 43836375 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || | ||| ||||| || || || || Sbjct 43836374 GAGGGCATGGCATGGAGGCAGTGCCATCAG 43836345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340077313055139