Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq30 154 2e-32 seq48 113 6e-20 >seq30 Length=30016984 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | | || ||| ||| ||||||||||| |||| || ||||| |||||| Sbjct 8153329 GTCTGGAACAATCGCTCATCATCCCACTCTGGATGTTCCTGTTTAAGCACATCACACACT 8153270 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||||| |||||||| || || |||||||| ||||||||||| || ||||| Sbjct 8153269 CTGTTATGTTCCCGTAGCCAGATTGTGGCATACATCATCAGACCAGGCACAAGACCAAAG 8153210 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | || | | ||| || | | || || |||||||| | | Sbjct 8153209 ACCTCCTGCCCCACAGCAAACCGAAGGTGTTCAGGGATGTGAGGGGGGTAGATCATCTCC 8153150 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863 ||||| |||||||| | ||| ||||||| || || |||| | ||| Sbjct 8153149 ACCTGAGTGTCTTTGACTGTGGGAGGATACACCTCTCCACCAATCACCTG 8153100 Score = 127 bits (140), Expect = 3e-24 Identities = 210/303 (69%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732 |||| | ||| | | | || ||||| || || ||||| | |||| || ||||| || | Sbjct 8155039 GAACACTGAATGAGACGAAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATTG 8154980 Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792 ||| | || | |||| ||| ||||| ||||| || || ||||| || ||||| || Sbjct 8154979 AGGCAGTGTTAATGATCTTAAAGCCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAATAGT 8154920 Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGA 8852 || || || || || ||| || ||||| | ||| || || || || | || | Sbjct 8154919 GAGGAGAACATATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCTCCAATTTCCA 8154860 Query 8853 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8912 ||| ||||||| |||||||| | ||||| ||||||||||||| || | | || | Sbjct 8154859 CCATGGTCTCACCAAAGATGGCATCAGGACGAGGCTTTTCCACCAGGAGGGCAGGATAGA 8154800 Query 8913 ACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTC 8972 |||||| || || ||||| || || || || | || || || ||||||||||||| Sbjct 8154799 ACTCCATGGCATCAATGTCACCATAGAGTGCTTCCAACTCTGCGGCCATTTCCTTTTCTC 8154740 Query 8973 CTG 8975 ||| Sbjct 8154739 CTG 8154737 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| |||||| | ||||| || || || | |||||||| || || | Sbjct 8153900 CTTACCCTGCCAGCAATTTGTCTGGTGAATGACTCAACGAACTGGGTAAGTCCATGTTCC 8153841 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATG-TAGTCATACTTTGTTTTATCAATCTC 9440 | | |||||| |||||||| | ||| | || |||| |||| | || ||| | Sbjct 8153840 AGTAATATGGAGTTGTTGTAGA-GAAACTGTTGATAGTTGTACTCCTGGTCATGAATTTG 8153782 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||| | || |||| || | |||||||||||| | |||||||||| ||| ||||| Sbjct 8153781 AAAGGTGTCAGGCAAAAGGGGATGCCAGTGATAAAGTGTGTTAAACTCAGAAGCAATACG 8153722 Query 9501 ATTTTGGTACTGGAA 9515 |||||||||||||| Sbjct 8153721 GTTTTGGTACTGGAA 8153707 >seq48 Length=15743623 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || || || || ||||| ||||| ||||||||||| | || ||||||||| || Sbjct 8800155 AAGCCTACCTCGCCACCGAATGTGCTTGGTTTCCAGTACTCTGGAGAGCAGATGGGATTT 8800214 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | || || || |||||||| |||||||| | ||| | || ||||| || || ||| Sbjct 8800215 CCTAGAAGACCCTTAAGGGAAAAGGGAGCCCCGATCTCTATCATACTCTCCCCAAAAATG 8800274 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| || || |||||| | || | || | ||| || |||| ||| ||||||||| Sbjct 8800275 GAGTTCGGTAGGCACTTTTCAAGCAGCAGCCCCGGGTAGAATTCCAAAGCATCGATGTCT 8800334 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || || || | || || || || ||||| |||||| Sbjct 8800335 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCT 8800376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708395999047920