Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq161 187 3e-42 seq67 136 4e-27 seq12166 96.9 4e-15 seq7 96.9 4e-15 seq19 89.7 5e-13 seq87 86.0 7e-12 >seq161 Length=830332 Score = 187 bits (206), Expect = 3e-42 Identities = 525/811 (65%), Gaps = 27/811 (3%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || |||||||| | |||||| || | ||| ||||||| | || ||||| | |||| Sbjct 529763 TTCATTTAAAAGTTAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCC 529822 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| | | ||||| || || || || || ||||| ||||| | ||| ||| Sbjct 529823 ATCCTCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATA 529882 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| |||||||||||||| ||| || | || ||| | ||||| || | Sbjct 529883 TTCTCCATAAAGTCAAATGGATTTTCTACTTTGAAAACCTTGTTAAAGCCCAGCTC-CAG 529941 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| |||||||| ||||| || || || || ||| || |||||||| || || Sbjct 529942 CATAAGCCTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAAT 530001 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || |||| | |||| ||| | || | | |||||| | ||| || | | ||| Sbjct 530002 TAGCTTCTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCATTGATAAT 530061 Query 21421 TATATTTATTA-TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATG 21479 | | | | ||| || | | | | || | || | ||||| ||||||| || | Sbjct 530062 TGTTTCTTTTACTCTCTGCTCTGAT-GGTTTGTGCAGCAGGTGTTTGAACATCAGGCAGG 530120 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 |||| ||||| || || || ||||| | || || | |||||| |||||||| | || | Sbjct 530121 CAAAGTCACAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGAAAATGTGAGGCCAG 530180 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599 |||| | ||||| ||| || | || |||||||| || | Sbjct 530181 GCATCAGTCCTC-GTTTCTTGAGCA----------------------GAAAAGAAGATTC 530217 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCC 21659 |||| || |||||||| || || | ||||| || || |||| ||||| ||| ||| Sbjct 530218 CCTCCACAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCA 530277 Query 21660 ATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAA 21719 | ||||| | || || | || | |||| ||||| |||| || || || | Sbjct 530278 AACGCAAGGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATTGAAGA 530337 Query 21720 GATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAG 21779 || | |||| | || | ||| |||||||||||||| Sbjct 530338 GAAATTCCCTTTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAG 530397 Query 21780 AATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAA 21839 ||||||| ||||| || || || || || || || |||| | || |||| | ||||| Sbjct 530398 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAA 530457 Query 21840 CCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAA 21899 | || |||||| | |||| || ||||||||||| |||||||| || ||| | | Sbjct 530458 CTTCTTGGCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGCAGAGA 530517 Query 21900 ATGCCAATATATTTTTTATAAAATATCGTTC 21930 | |||| | | ||||||||||| ||| Sbjct 530518 AAGCCAGAAAGTGGGATATAAAATATCATTC 530548 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 ||||| || | |||||| | | ||||| | | | | || |||| |||||| || | | Sbjct 575735 AGTTCCTCCTGGCTTTCAAACTGAGCAAGATTGGATGCTAAGGAAGCACAAAAAGTCTGG 575676 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| | ||||||||||| ||||| || || | ||||||||||||| Sbjct 575675 CTGAATGTCCAATTCCCTATGTCTTCAGAAAAATAAAAACACTTGTTTCCAAATCCAATC 575616 Query 130773 CATCCCTTTGGGCAAGTAACA 130793 || | |||||||| ||| || Sbjct 575615 CAATCTTTTGGGCAGGTAGCA 575595 >seq67 Length=10555288 Score = 136 bits (150), Expect = 4e-27 Identities = 567/884 (64%), Gaps = 20/884 (2%) Strand=Plus/Minus Query 21188 TGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCC 21247 ||||| || |||| | || || || |||||||| || || || || || || |||| Sbjct 3668887 TGATACTCTGAAACT-TGTTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCC 3668829 Query 21248 ATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCA-GTTCTGATAATAA 21306 ||||||||||| |||||||| | | ||| | || | | || ||| |||| | ||| Sbjct 3668828 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTT-TGAGAATCCAAGTTCCACAAGTAA 3668770 Query 21307 TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTT 21366 ||| || ||||||||||| ||||| || | ||| || |||| ||||| | || | Sbjct 3668769 TCTTTCAGCTACAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCC 3668710 Query 21367 TACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATT 21426 || || | ||| ||| ||||| | || || ||| || | |||||| || | Sbjct 3668709 AACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTC 3668650 Query 21427 TATTATCCTAGATGTACT--AGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAA 21484 | | ||| | | || || || | ||| | | |||||| | || ||||| Sbjct 3668649 CCTCACCCTTT-TCTTCTGAAGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAAG 3668591 Query 21485 TCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATT 21544 ||| | | | ||||||| || | || | ||||| ||||||| | || || || Sbjct 3668590 TCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGATG 3668531 Query 21545 AATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCA 21604 |||||||| |||||||| || || | ||||| | |||||| |||||||| || || Sbjct 3668530 GGACCTCTCTTCTTTAACCAGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCC 3668471 Query 21605 ACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTT 21664 || ||| | || || | || ||| || | ||||| | | |||| ||||||| Sbjct 3668470 ACAGCACTGATGGCCACCACTCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCATCAC 3668411 Query 21665 TCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGA 21724 ||||| | || |||| |||| | ||||| | ||| || || || | | | Sbjct 3668410 AGGGCCCAGTCTGTTTTTTTCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAAA-A 3668352 Query 21725 tttt--tttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAAT 21782 ||| |||| | ||| | || ||| || || | || | Sbjct 3668351 TTTCCCTTTCTTGGG-ATCTCTGATTCTAGTATCTATTAGCAAACTGTATATCTTTGAGT 3668293 Query 21783 GTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCT 21842 | | ||| | ||| || ||||| || || ||||| | ||||||||| ||| |||| Sbjct 3668292 GAACATTCTTTATGAGAATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACCT 3668233 Query 21843 CGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC---AAAAA 21899 | | ||| | | |||| ||||||||| | |||||||||||| || ||||| Sbjct 3668232 CCTGACTAAAGCTCTCCACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAAAAAAA 3668173 Query 21900 ATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTG--TTAA-TTTTTTCCAATCTA 21956 | || || |||| | |||||| ||| | ||||| |||| || ||| | | | Sbjct 3668172 AAGCTAAGATATGAGAGAGAAAATA--ATTC-TCATCTGATTTAAGCTTGTTCTAGTGAA 3668116 Query 21957 ATAAATCTTTTGATAAA-TCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTA 22015 | ||| ||||||||| || || ||||| | |||||| ||| || |||| || | Sbjct 3668115 GGAGATCCTTTGATAAAGTCAACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTCA 3668056 Query 22016 TACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 ||||| |||| ||||| || ||||||||||| ||||| Sbjct 3668055 TACATTTTCCAAATATCGGGGTACTGAATTGGAAATATGACAAA 3668012 >seq12166 Length=2209 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || |||||||| |||||||| || | ||| ||||||| | || ||||| | |||| Sbjct 2051 TTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCC 2110 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||| ||||| | ||| ||| Sbjct 2111 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATA 2170 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||||||||| Sbjct 2171 TTCTCCATAAAGTCAAATGGATTTTC 2196 >seq7 Length=60492774 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || |||||||| |||||||| || | ||| ||||||| | || ||||| | |||| Sbjct 54097684 TTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCC 54097743 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||| ||||| | ||| ||| Sbjct 54097744 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATA 54097803 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||||||||| Sbjct 54097804 TTCTCCATAAAGTCAAATGGATTTTC 54097829 >seq19 Length=38427206 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||||||| ||| || ||||| | | Sbjct 3902799 TTTAAAAATCTGCATCCAAAGTGAAGACATTATCTGTGGTTTCTGCCATAACGGCAAAAC 3902858 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || ||||| || || || || Sbjct 3902859 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 3902918 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 3902919 CCATAAAATCAAAGGGATTTTC 3902940 >seq87 Length=7156779 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||||||||||| |||||| || |||||| | || | || || || || ||||| | | Sbjct 718078 ACTATACATTTTAGAATGCATGTTTTCTGTGGCAACTTGGAAGCCATAGAAACAGCACAC 718137 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| | |||||| || ||||| || |||| ||||||||| ||| ||||| Sbjct 718138 TTCTGTAATTTGAACTTCTTGGCTAAATCATTCCACCAAATTTTCATTTGTTATGCCATC 718197 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTC 21930 ||| || ||||| || |||| | | ||||||||||||||| Sbjct 718198 ACTTGCTGCAAAGAAAGCCAGAACAAGCAATATAAAATATCGTTC 718242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531804107083320