Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq138 86.0 5e-12 >seq138 Length=1287892 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||||| || ||||| || || || || || || ||||| ||| | || |||| || Sbjct 343629 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 343570 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || ||||| ||| | || || || || |||||||||||| | ||| ||| Sbjct 343569 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGAC 343510 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || || || | ||| ||||| || || ||||||| | || | | ||||| Sbjct 343509 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGCCGTACTCTTTCTGATTAC 343450 Query 115463 AACATTCAAAAAGAGTCTAC 115482 || || || |||||||| || Sbjct 343449 AATATCCAGAAAGAGTCCAC 343430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425268610833160