Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq83 118 9e-22 seq138 100 2e-16 seq9 95.1 1e-14 >seq83 Length=7591375 Score = 118 bits (130), Expect = 9e-22 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | ||| |||| ||||| ||||||||||| || ||||||||||||| Sbjct 414040 CCCACCTCTGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 413981 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| |||| |||| || ||||| ||| | || | || ||| ||||| || Sbjct 413980 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGG 413921 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| ||||| || | | ||| || | | | ||||| | ||||||| Sbjct 413920 GATGCCCTCCTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 413861 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTAG 16942 |||| ||||||||| || || ||||| || || || || ||||||||| | ||| Sbjct 413860 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTATCTAG 413806 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| ||||||||||| || ||||||||||||| || ||| |||| Sbjct 414253 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 414194 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || | || ||| ||||| || | |||||| ||||| Sbjct 414193 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 414134 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 || | | ||| || | | | ||||| | ||||||| |||| ||||||||| Sbjct 414133 TTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 414074 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || || || || |||||||| Sbjct 414073 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 >seq138 Length=1287892 Score = 100 bits (110), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||| || || || ||||| || | | || | | || Sbjct 343415 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTACGGCCATCT 343474 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| || ||||| ||| | || |||| ||| ||||| || | ||| ||||| || Sbjct 343475 TCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 343534 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| | ||||||| |||| |||||||| Sbjct 343535 TGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGG 343592 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || ||||| || || ||||| |||||||||||| Sbjct 343593 TCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 343630 >seq9 Length=54061371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||| || || ||||||||||| | | || | | || Sbjct 30845436 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 30845377 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| | ||||| ||| | || |||| ||| ||||| ||| | ||| ||||| || Sbjct 30845376 TCCAGCAGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 30845317 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | ||||| | | ||||| | |||| |||||| | Sbjct 30845316 TGGATCTTAGC--CTTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAGGGTGATAG 30845259 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || ||||| || || | ||| |||||||||||| Sbjct 30845258 TCTTGCCAGTCAGGGTCTTCATAAAGATCTGCATTTTG 30845221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405016201063570