Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq138 120 3e-22 seq83 96.9 3e-15 seq1035 91.5 1e-13 seq30 87.8 2e-12 >seq138 Length=1287892 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| |||| || || ||||||| | || |||||| | Sbjct 343627 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 343568 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| ||||| || ||| || |||||||| ||||| |||||||| Sbjct 343567 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCCCCTGACCA 343508 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || || ||||||| || ||| | |||||||| Sbjct 343507 GCAGAGGCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGCCGTACTCTTTCTGATTACAA 343448 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||| || ||||| ||||| || || Sbjct 343447 TATCCAGAAAGAGTCCACCCTGCA 343424 >seq83 Length=7591375 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| |||| || || ||||||| | || |||||| | Sbjct 413812 AATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 413871 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| | ||| || ||| ||||| || || || || || ||||| Sbjct 413872 TGACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCA 413931 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||| | ||||| || ||| ||||| Sbjct 413932 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAA 413991 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | ||||| | || ||||| || Sbjct 413992 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTCAGAGGTGG 414039 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || |||||| | | Sbjct 414041 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 414100 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| || || || || || ||||| Sbjct 414101 GACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCAG 414160 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||| | ||||| || ||| ||||| Sbjct 414161 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 414220 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || | ||||| Sbjct 414221 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 414252 >seq1035 Length=9571 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||||||||| ||||| ||||||| | ||||| || || |||||||| || Sbjct 155 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 96 Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 || || || ||| || ||| ||||| ||||| || |||||||||||||| | Sbjct 95 GA--CAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGAT 38 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGA 25153 | || ||||| || || ||||| ||||| Sbjct 37 TGATCTTTGCTGGTAAGCAATTGGAAGA 10 >seq30 Length=30016984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/215 (70%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| || | || ||| | | Sbjct 13544296 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCAAGGTCGAGCCCAGT 13544355 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| ||| ||| |||| || || || ||||||| Sbjct 13544356 GACACCATCGAG--AATGTCAAAGCGAAATTTCAA-GACATGGAGGGCATCTCACCTGAT 13544412 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 | |||| | || ||||| || ||||| | || |||| |||||| | |||||| Sbjct 13544413 -AGCAGCATCTGATATTTGCAGGTAAACAGCTGGAGGATGGCCGCACTCTCCCAGATTAC 13544471 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||||||||| ||| | || ||||| Sbjct 13544472 AACATCCAGAAAGAATCCACTCTATACTTGGTGCT 13544506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433251195726545