Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq161 192 7e-44 seq67 190 2e-43 seq58 145 8e-30 seq82 129 7e-25 seq7 105 7e-18 >seq161 Length=830332 Score = 192 bits (212), Expect = 7e-44 Identities = 497/757 (66%), Gaps = 28/757 (4%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 ||||| || ||||| || |||||||| ||||||| |||||||| || | || Sbjct 529949 CTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCTTC 530008 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 |||| | || || || | ||| | | || ||| || || | | | ||||| Sbjct 530009 TCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCATTGATAATTGTTTCT 530068 Query 93044 ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 ||||||| | || |||||| || | | | ||| |||| | ||| |||||||| Sbjct 530069 TTTACTCTCTGCTCTGATGGTTTGTGCAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCA 530128 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGGTAACAG 93162 ||||| || || ||| || || || | ||||| ||||| | || || | ||| Sbjct 530129 CAGTGTAAGCCCTCATCTT-TGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAG 530187 Query 93163 TCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCAC 93222 |||||||||||||||| |||||| || || || ||||| Sbjct 530188 TCCTCGTTTCTTGAGC-----------------------AGAAAAGAAGATTCCCTCCAC 530224 Query 93223 GGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAA 93282 || ||||| || |||| |||||| || | | || || | ||| | || Sbjct 530225 AGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAACGCAA 530284 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 |||||||||||||| ||||| | |||||| | |||| | || || || || || | || Sbjct 530285 GGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATTGAAGAGAAATTC 530344 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 | || | || ||| ||||| || || || | ||| ||||||||||||||| | Sbjct 530345 CCTTTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTAT 530404 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || ||||| ||||||||||| || ||||||| | ||||| || || || |||||||| Sbjct 530405 GTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTTCTTG 530464 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 ||||| ||| || | ||| ||||| ||||| ||||| ||| ||| | ||||||| Sbjct 530465 GCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGCAGAGAAAGCCAG 530524 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTT 93581 | || |||||||| | || ||| || || ||||| | | || | || Sbjct 530525 AAAGTGGGATATAAAATATCATTCCTCAGGCTTCAGGGCTTCCCAGTGCTGA-ATGTC-C 530582 Query 93582 TTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCC 93641 || |||| | || || ||| | |||||||| || || || ||||| || |||| | || Sbjct 530583 CTGGAAGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTACACATCTGCC 530642 Query 93642 ATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 | || | || |||| || ||||| ||| | || || Sbjct 530643 AGATACCATGGTATTCCATAGGAAAGATGGCCAAGCG 530679 >seq67 Length=10555288 Score = 190 bits (210), Expect = 2e-43 Identities = 623/947 (66%), Gaps = 27/947 (3%) Strand=Plus/Minus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||| ||||||||||| | ||||| ||||| || || | |||| | || || | Sbjct 3668944 TTAAAAATCTGCATCCAAGGTAAAGACATTCTCT-GTAGTTTCTAA------ACTGCAGA 3668892 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 | || || || ||||| || | ||||||||||||| || || || ||||| || | Sbjct 3668891 ATGCTGATACTCTGAAACTTGTTCT-CAAAGAAATTTGTTTTCCCATCTAAAGAAAT-GT 3668834 Query 92862 ATTCACTAGTG---ATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACA 92918 ||| || | ||||| | || | | || || ||| | ||| | ||| Sbjct 3668833 TTTCCATAAAATCAAAGGGATTTTCTGCCTGAAAA-ACCTTTGAGAATCCAAGTTCCACA 3668775 Query 92919 A-TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 | |||||| |||||||||||||| || ||||| ||||||| |||| ||||| | | Sbjct 3668774 AGTAATCTTTCAGCTACAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATG 3668715 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA- 93036 || | || || | | || || || || || | ||| ||| || || | | ||| Sbjct 3668714 AGGCCAACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCAT-TAACAAT 3668656 Query 93037 GATTTCTATTACTCTACTATTTGGTGGTTTT-TGTACGACATAATTGTACATTAAGCACG 93095 ||| || | || || | || | || || | ||| | || | |||||| ||| | Sbjct 3668655 GATCTCCCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACATTAGGCAAG 3668596 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGAT-ATCAACTCATTGCTGAATGTTAAACCT 93154 ||||||| | | |||| |||| || | |||| ||||||| ||||| | || Sbjct 3668595 CAAAGTCATAGAGAAGTTCTTCATCTC-TGTTGATCAGCTCATTGAAAAATGTGAGTCCA 3668537 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | | |||| ||||| | ||| || || | ||||||| || || || || || Sbjct 3668536 GGGATGGGACCTCTCTTCTTTAACCAGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATT 3668477 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA-CTGCTGAT 93273 |||||||| || | ||||| | | ||| ||||| | | || ||||| || Sbjct 3668476 CCTTCCACAGCACTGATGGCCACCACTCTTTCCCCAAAAGTAGACTTTCTATCTGCT-AT 3668418 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 |||| | ||||| || | ||||||||||| | || | ||||| || || ||||| Sbjct 3668417 CCATCACAGGGCCCAGTCTGTTTTTTTCTTAACGTATGGCATTGTTTTAATTGCATTAAA 3668358 Query 93334 TAGGTAATCTCGCTCG-TCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTT 93392 || ||| || || | | ||||| || ||||| |||| || | || || | Sbjct 3668357 TAAA-AATTTCCCTTTCTTGGGATCTCTGATTCTAGTATCTATTAGCAAACTGTATATCT 3668299 Query 93393 CAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCT 93452 || || ||||||| || |||||| || || |||||||| | ||| || | | | Sbjct 3668298 TTGAGTGAACATTCTTTATGAGAATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTT 3668239 Query 93453 GCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC---GGATGCTG 93509 |||| || ||| ||| ||||| || | ||||||||| | | ||||| || ||| Sbjct 3668238 GCACCTCCTGACTAAAGCTCTCCACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAA 3668179 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT 93569 ||||||||| || ||||| | ||||| |||||||| ||||||||| | | | | Sbjct 3668178 AAAAAAAAGCTAAGATATGAGAGAGAAAATAATTCTCATCTGATTTAAGCTTGTTCTAGT 3668119 Query 93570 CGGATAGATCTTTTGAAAGA-TCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 ||||| ||||| | | || || ||||| | ||||| || ||||| | ||| | | Sbjct 3668118 GAAGGAGATCCTTTGATAAAGTCAACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGT 3668059 Query 93629 TTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 | ||||| | ||| || || | || |||||||||||||||||||| Sbjct 3668058 TCATACATTTTCCAAATATCGGGGTACTGAATTGGAAATATGACAAA 3668012 >seq58 Length=13050397 Score = 145 bits (160), Expect = 8e-30 Identities = 438/669 (65%), Gaps = 17/669 (3%) Strand=Plus/Plus Query 93035 AAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC 93094 || |||||| ||||||| | |||||| |||| | | ||| |||| | ||| Sbjct 9036006 AATATTTCTTTTACTCTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAG 9036065 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACC 93153 ||| |||| | ||||||| || |||| || || || | || || ||| ||| || Sbjct 9036066 GCAGAGTCACAAAGTAAACCCTCATCTC-TGCTAATAAGTTCACTG--GAAACTTAGGCC 9036122 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTAT 93213 || | || ||| | |||||||| | | |||||||| ||||| | || | || || | Sbjct 9036123 AGGCATCAATCCCCATTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTT 9036182 Query 93214 ACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGAT 93273 |||||||| || ||||| || |||| || ||| | | || || | || Sbjct 9036183 TCCTTCCACAGCGGCAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCCCCAAT 9036242 Query 93274 CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAA 93333 ||| | || || ||| |||| ||||| | | |||||| |||||| || || || || Sbjct 9036243 CCAATGCAAGACCTAATTTACTTTCTTCTTTACATAAGGTATTGTTTCAATGGCATTGAA 9036302 Query 93334 TAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTC 93393 || | || | || | ||||| || || || || | ||| ||||||||| Sbjct 9036303 GAGAAATTCCCTTTCTTTGAAATCTT-----TAAGTGTCAATAAGGAGACTATACATTTC 9036357 Query 93394 AGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTG 93453 | |||| | || ||||| ||||||||||| | |||||||| | |||| || || || Sbjct 9036358 ACAATGTAGTTT-TCCATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTG 9036416 Query 93454 CACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaa 93513 ||||| || |||| ||| || | ||||||||| | ||| ||||| ||||||||| Sbjct 9036417 AACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAA 9036476 Query 93514 aaaaGCCA-ATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGG 93572 ||| || | |||| ||||||| | | ||| ||| || ||| | | Sbjct 9036477 GAAATTCATAATTATGAGACATAAAATATCATACCTCAGATTTCAGGGCTTCC---TAGT 9036533 Query 93573 ATAGA---TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTT 93629 ||||| || || |||| | | || | || | ||| |||| || |||| || || | Sbjct 9036534 ATAGAATGTCCTTGGAAATAGCTACCACCTCTTCTGTCAAAAAGGAACCTTCAGCCTTCT 9036593 Query 93630 TGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTAT 93689 | | || | ||| || || || ||| || ||||| | |||||| | | |||||| | Sbjct 9036594 TAGAAATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAAGCAGTGAGGGTTCT 9036653 Query 93690 CTTTTAGTA 93698 || | |||| Sbjct 9036654 CTCTCAGTA 9036662 >seq82 Length=7573503 Score = 129 bits (142), Expect = 7e-25 Identities = 269/397 (68%), Gaps = 3/397 (1%) Strand=Plus/Plus Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 || || ||||| ||||| ||||| | |||| | |||| || || || | || | Sbjct 1078602 AAGGCACAATCTGCTTTCTTCTTCACCCAAGACATCATTTCAATGGCATTGGAGAGAAAT 1078661 Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400 || | || | |||| | ||||| | || || | ||| ||| ||||||||||| Sbjct 1078662 TCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCAGAATGT 1078721 Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460 | || ||||| ||||||||||| || ||||||| | ||||| | || || || ||| Sbjct 1078722 ATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGAACCTCT 1078781 Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC-TGCaaaaaaaGC 93519 || ||||| || || ||||||||| | |||| ||||| |||| | |||| ||||| Sbjct 1078782 TGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACATGCGTTCAAAGAAAGC 1078841 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGAT 93578 | | ||| |||||||| | || ||| || || ||||| | | || | | Sbjct 1078842 TAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTCCCAGTGCTGACTG-T 1078900 Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 | || |||||||| || || || | ||||| || || || || ||||| || ||||| | Sbjct 1078901 CCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGAAGCCTCGGCTTTCTTATACATTT 1078960 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 ||| || || || || | || | ||| ||| |||| Sbjct 1078961 GCCAAATATCGTGGTAATTGATAGCAAACATGGCAAA 1078997 >seq7 Length=60492774 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| |||||||| ||| Sbjct 54099266 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATTGATGCA 54099325 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || || ||||| || ||||| || |||| |||||| Sbjct 54099326 AAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCTACAACACGTTC 54099378 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || | ||| ||||||||||||||| | || ||||| ||||||||| Sbjct 54101131 ATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 54101190 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || || |||||||| | ||||| || || || |||||||| ||||| ||| || Sbjct 54101191 AAGCCATAGAAACAGCGTGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCAC 54101246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556759569667320