Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq30 116 3e-21 seq108 114 1e-20 seq83 107 2e-18 seq25 91.5 1e-13 seq1035 84.2 2e-11 >seq30 Length=30016984 Score = 116 bits (128), Expect = 3e-21 Identities = 146/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| || | || || ||| Sbjct 13544294 AGATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCAAGGTCGAGCCCA 13544353 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||| ||||||||| |||||| || |||| ||| Sbjct 13544354 GTGACACCATCGAGAATGTCAAAGCGAAATTTCAAGACATGGAGGGCATCTCACCTGAT- 13544412 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| |||||||| || |||||| | |||||| |||||| || | ||||||| Sbjct 13544413 AGCAGCATCTGATATTTGCAGGTAAACAGCTGGAGGATGGCCGCACTCTCCCAGATTACA 13544472 Query 22397 ACATTCAAAAAGAATCCAC 22415 |||| || ||||||||||| Sbjct 13544473 ACATCCAGAAAGAATCCAC 13544491 >seq108 Length=3381964 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || ||| | || | ||| || || | | ||| || || ||| Sbjct 512049 AGATGCAGATCTTTGTGAAGACTCTGACAGTTAAGACCATCTCCCATGAGGTTGAGCCCA 511990 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| | | || || ||||| ||||||||||| ||||| | ||| |||| || | Sbjct 511989 GTGATAGCTTCGAGAATGTCAAAGCCAAAATTCAAGAGAAGGACAGCATTACACCTGACC 511930 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 |||| ||| ||||||| ||||||||| | ||||| || ||| |||| |||||| Sbjct 511929 AACAGTGTCAGATATTTGTGGGCAAACAGCTGGAGGACGGCCCCACTCTCTCACATTACA 511870 Query 22397 ACATTCAAAAAGAATCCACCATACATTT 22424 |||| || ||||| |||||| | || || Sbjct 511869 ACATCCAGAAAGAGTCCACCCTGCACTT 511842 >seq83 Length=7591375 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 414040 GATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 414099 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| || || |||||||||||||| || || ||||| || Sbjct 414100 TGACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCA 414159 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||||||||| ||| | || || |||||| | ||||| ||||| Sbjct 414160 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAA 414219 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || || || |||||| | || | || |||| ||| | |||||| Sbjct 414220 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCTTGAGGGGAGGT 414268 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 413813 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 413872 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||||||||| || || ||||| || Sbjct 413873 GACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCAG 413932 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||| ||| | || || |||||| | ||||| |||||| Sbjct 413933 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 413992 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 413993 ATCCAGAAGGAGTCCACC 414010 >seq25 Length=31340621 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| ||||| ||||| || ||||| |||||||| ||||||||| | |||||| |||| Sbjct 6808434 GGTATCCCACCTGATCAGCAGCGTCTGATATTTGCAGGCAAACAGCTGGAGGATGGCCGC 6808493 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408 || |||| ||||||||||| || |||| Sbjct 6808494 ACTCTCTCAGATTACAACATCCAGAAAG 6808521 >seq1035 Length=9571 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || ||||| ||||| || ||||| || ||||| | ||||| ||| | | || ||| | Sbjct 155 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 96 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| || || ||||||||||| ||||| ||||| || |||||| | | Sbjct 95 GACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 36 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGA 22373 || ||||| || || || || || || Sbjct 35 ATCTTTGCTGGTAAGCAATTGGAAGA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419653606228795