Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq83 183 6e-41 seq138 163 5e-35 seq17 145 1e-29 seq9 145 1e-29 seq1035 127 4e-24 seq30 122 2e-22 seq108 102 2e-16 seq2 91.5 3e-13 seq25 84.2 4e-11 >seq83 Length=7591375 Score = 183 bits (202), Expect = 6e-41 Identities = 173/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || |||||||| || |||||||| || ||||| || || | | Sbjct 414030 AGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGC 413971 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| ||||| || || | || || |||||||| || ||||| ||| Sbjct 413970 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCC 413911 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| |||||||| ||| |||||||| | || || |||| |||| Sbjct 413910 TTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 413851 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 ||||| || ||||| |||||||| ||||| ||||||||||| Sbjct 413850 ATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTAT 413810 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||| ||| || |||||||| || |||||||| || ||||| Sbjct 414267 CCTCCCCTCAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 414208 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| ||||| | |||||| ||||| || || | || || |||||||| || Sbjct 414207 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 414148 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| |||||||| ||| |||||||| | || || Sbjct 414147 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 414088 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || ||||| |||||||| ||||| |||||||| Sbjct 414087 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 >seq138 Length=1287892 Score = 163 bits (180), Expect = 5e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| ||||| || ||||| || || || | |||||||| Sbjct 343418 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTACGGCCATCTTCC 343477 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || || ||||| || || ||||| || ||||||||||| || || || Sbjct 343478 AACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 343537 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || ||| |||||||| | || || |||| ||||||||| || Sbjct 343538 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 343597 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| || || ||||||||| || Sbjct 343598 CCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 343630 >seq17 Length=43943611 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| || || || || || | |||||||| Sbjct 21311340 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 21311399 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| ||| || ||||||||||| || ||||| || ||||||||||| | || || Sbjct 21311400 AGCTGCTCCCCTGCAAATATGAGTCTCTGCTGGTCAGGGGGAATGCCTTCTGTATCCTGG 21311459 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || ||| ||| |||| | || || |||| |||| |||| || Sbjct 21311460 ATCTTGGCCTTCACATTCTCAATGATGTCATTGGGCTCCACCTCCAGGGTGGTGGTCTTG 21311519 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || ||||| || || || || |||||| || Sbjct 21311520 CCAGTCAGGGTTTTCACAAAGATGTGCATTTTG 21311552 >seq9 Length=54061371 Score = 145 bits (160), Expect = 1e-29 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| || || || || || | |||||||| Sbjct 30845433 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 30845374 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | | |||| || || || ||||| || || ||||| || ||||||||||| || || || Sbjct 30845373 AGCAGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGG 30845314 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||| || ||| |||||||| |||| || | |||| |||||| || || Sbjct 30845313 ATCTTAGCCTTCACATTCTCAATGGTGTC-ACTGAGCTCCATCTCCAGGGTGATAGTCTT 30845255 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| | || ||||||||| || Sbjct 30845254 GCCAGTCAGGGTCTTCATAAAGATCTGCATTTTG 30845221 >seq1035 Length=9571 Score = 127 bits (140), Expect = 4e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 68298 GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATG 68357 || || || ||||| || ||||| || || || || | |||||||||||| ||||| || Sbjct 1 GTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATA 60 Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||||||||| ||||| | |||||| || |||||||| | ||||| |||||| Sbjct 61 CCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCC 120 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || |||||||| || || || | ||||| ||||| Sbjct 121 AAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 155 >seq30 Length=30016984 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||||| ||| ||||| ||||| |||||||| ||||| | ||| || | ||||| || Sbjct 13544503 ACCAAGTATAGAGTGGATTCTTTCTGGATGTTGTAATCTGGGAGAGTGCGGCCATCCTCC 13544444 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || || ||||| || || | || |||| ||||| ||| |||||||| Sbjct 13544443 AGCTGTTTACCTGCAAATATCAGATGCTGCTA-TCAGGTGAGATGCCCTCCATGTCTTGA 13544385 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 | || || ||||| |||||||||||| | || || | | ||||||||| || Sbjct 13544384 AATTTCGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTTGAGGGTGATGGTCTTG 13544325 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| || || |||||||| Sbjct 13544324 CCTGTCAGGGTCTTCACAAAGATCTGCAT 13544296 >seq108 Length=3381964 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68256 AAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAAC 68315 ||||| || ||||||||||| |||||||| |||| ||||| || || || || | | Sbjct 511842 AAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATGTGAGAGAGTGGGGCCGTCCTCCAGC 511901 Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 || || || | ||||| | | |||||||| |||| ||||| ||||| |||||||| Sbjct 511902 TGTTTGCCCACAAATATCTGACACTGTTGGTCAGGTGTAATGCTGTCCTTCTCTTGAATT 511961 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 || || ||||| ||||| | | || | || || || || |||||| || | Sbjct 511962 TTGGCTTTGACATTCTCGAAGCTATCACTGGGCTCAACCTCATGGGAGATGGTCTTAACT 512021 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| || || |||||||| Sbjct 512022 GTCAGAGTCTTCACAAAGATCTGCAT 512047 >seq2 Length=69027483 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/162 (73%), Gaps = 7/162 (4%) Strand=Plus/Plus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 ||||| | | |||||||| || | ||||||||| ||||| ||||| ||||| || | Sbjct 27764389 GAAGGTGAAGCACCAAGTGCAGGGAGGACTCTTT----ATGTTGTAATCTGAGAGAGTGC 27764444 Query 68302 TCCCA--TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCC 68359 ||| ||||| | ||| || || | ||||| || | || ||||| | ||| ||||| Sbjct 27764445 AGCCAAATCTTCCAGCTGTTTGCCCACAAATATCAGGCGCTGCTGGTCAG-TGGGATGCC 27764503 Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 |||||||||||||| || || ||||| ||| ||||||| Sbjct 27764504 CTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTC 27764545 >seq25 Length=31340621 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||||||||| || || ||||| |||||||||||| | || || || Sbjct 6808321 CCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCG 6808262 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || ||||| |||||||| || || |||||||| Sbjct 6808261 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6808218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921454860567960