Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq138 98.7 8e-16 seq25 98.7 8e-16 seq91 91.5 1e-13 seq16 86.0 5e-12 seq9 86.0 5e-12 seq2 86.0 5e-12 >seq138 Length=1287892 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || || |||||||| | |||||| |||||| | || || || Sbjct 343430 GTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTACGGCCATCTTCCAACTGCTTGCCT 343489 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || |||||||||||||| || ||||| || Sbjct 343490 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC 343549 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 343550 ACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 343609 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 343610 TTCACAAAGATCTGCAT 343626 >seq25 Length=31340621 Score = 98.7 bits (108), Expect = 8e-16 Identities = 157/224 (70%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 |||| || |||| || | ||| | || || || || ||||||||||| || || | Sbjct 4762687 CCACAAAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAA 4762746 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 ||||| |||||| ||||| |||||||| |||| || | || || || |||||||| Sbjct 4762747 GTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAAT- 4762805 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 |||| || || ||||| ||||| | ||| | ||||| | || ||| || || Sbjct 4762806 TCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCG 4762865 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || || || || |||||||||||||||||||| Sbjct 4762866 AGTGTATTAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 4762909 >seq91 Length=6382753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | || |||| ||| | ||| | || || || || | ||||| ||| || Sbjct 364175 ACCACCATGAAGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTCGTAGTCAGA 364234 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| ||||| |||||||| ||||||||| | || || ||||| Sbjct 364235 CAAGGTACGTCCATCTTCTAGTTGCTTACCAGCAAAGATGAGACTTTACTGATCAGGAGG 364294 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || | ||||| ||||| | ||| | |||| || || ||| || Sbjct 364295 AATTCCTTCCTTATTCTGGATCTTGGCTTTTACATTTTCTATAGTGTTGGAGGGTTCAAC 364354 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || | || ||||||| ||||||||||| Sbjct 364355 CTCGAGAGTAATAGTCTTCCCCATAAGGGTTTTTAAGAAAATCTGCAT 364402 >seq16 Length=44863414 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || |||||| ||| || || ||||| |||||| ||||| |||||| Sbjct 42573744 GTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTACATCCATCTTCCAGTTGCTTACCA 42573803 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | || || || |||||||| ||||| || || ||||| |||| Sbjct 42573804 GCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTT 42573863 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||||| | || ||| | |||| | || || || | || || ||| Sbjct 42573864 ACATTTTCTATAGTGTCCGAGGGTTCAGCCTCCAGCATAACAGTCTTCCTCGTAAGGGTT 42573923 Query 114366 TTTACAAAAATCTGCAT 114382 ||||| ||||||||||| Sbjct 42573924 TTTACGAAAATCTGCAT 42573940 >seq9 Length=54061371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || | ||| || |||||| || | || || Sbjct 30845421 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCAGCTTGCCT 30845362 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||||||||||||||| || ||||| || Sbjct 30845361 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTAGCCTTC 30845302 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| || || | |||| ||| | || ||||| ||||| || Sbjct 30845301 ACATTCTCAATGGTGTCACTGAGCTCCATCTCCAGGGTGATAGTCTTGCCAGTCAGGGTC 30845242 Query 114366 TTTACAAAAATCTGCAT 114382 || | ||| |||||||| Sbjct 30845241 TTCATAAAGATCTGCAT 30845225 >seq2 Length=69027483 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || |||| || ||| | || || || || ||||||||||| || Sbjct 23646329 ACCACCACGAAGCCTCAGCACCTGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 23646270 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| ||||| ||| |||| | || || | || || || ||||| Sbjct 23646269 CACGGTACGTCCATCTTCCAGTTGCTTATCAGCAAACATCAGTCTTTGATGATCAGGAGG 23646210 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 23646209 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAAC 23646150 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 114381 |||| || | || || | || || |||||||| |||||||||| Sbjct 23646149 CTCCATTGTAATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCA 23646103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420059934197316