Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq13 95.1 1e-14 >seq13 Length=48154242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 20254 AAGCATATAAGTTAAG-AGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312 || ||| |||| |||| |||| ||||| | ||||| ||||| || ||||| |||||| Sbjct 3963879 AATCATGTAAGGTAAGCAGGGCATAGCACTCGATGTTGAAAGGCACGCCCAAGCCCATGA 3963938 Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATA 20372 |||| ||||| || |||||| |||||| ||||| || | || || || || || | Sbjct 3963939 CTCCTGACCTTTGGTACAGCCAACAGGACAGCTCCCCATTCACTG--TAGAACTGGCAGA 3963996 Query 20373 ACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAA 20432 | || || || || ||| |||||| | || || || ||||| ||||||| | Sbjct 3963997 AGGCATGGCATGGAGGCAGCACCATCAGAGGAAAATCTTTTGGTTTCCAAACACACATGA 3964056 Query 20433 TGATTCTTCTATCGTGCGGATTATTTTTTAT 20463 |||||||||| || | || || |||| || Sbjct 3964057 TGATTCTTCTGTCTTCAGGGTTGGTTTTGAT 3964087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441292563942120