Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq138 120 7e-22 seq83 109 1e-18 seq25 105 2e-17 seq2 102 2e-16 seq9 100 7e-16 seq16 89.7 1e-12 seq1 87.8 4e-12 >seq138 Length=1287892 Score = 120 bits (132), Expect = 7e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || || || | ||| ||||| |||||||| || || | Sbjct 343400 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAA 343459 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| || || || ||||| ||||| || | ||| || | || Sbjct 343460 AGAGTACGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 343519 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||||||||| || || ||||| || || || | || || | || || Sbjct 343520 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 343579 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| ||||| || ||||| ||||| || || ||||||||| || Sbjct 343580 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 343630 >seq83 Length=7591375 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || || | ||| || || ||||| || ||||||| Sbjct 414039 CCACCTCTGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 413980 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | || || || || ||||||| | ||| || ||| Sbjct 413979 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 413920 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| ||||| || || || || || | || || | || || Sbjct 413919 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 413860 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || ||||| ||||| || ||||| ||||| ||||| ||||||||||| Sbjct 413859 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTAT 413810 >seq25 Length=31340621 Score = 105 bits (116), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || || || || ||||||| ||| || || || || || ||||| | | || ||| Sbjct 4762693 AGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGT 4762752 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || ||||| | ||| || || || |||||||| | || ||| | || |||| ||| Sbjct 4762753 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTC-TTCC 4762811 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||||||||| || ||||| || |||||||||| || | ||| || ||||| || Sbjct 4762812 TTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTA 4762871 Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||||||| || || || || || || |||||||| Sbjct 4762872 TTAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 4762909 >seq2 Length=69027483 Score = 102 bits (112), Expect = 2e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || || |||||| ||| || || || || || ||||| | Sbjct 23646328 CCACCACGAAGCCTCAGCACCTGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAC 23646269 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || | || || ||||| | || ||| | || Sbjct 23646268 ACGGTACGTCCATCTTCCAGTTGCTTATCAGCAAACATCAGTCTTTGATGATCAGGAGGA 23646209 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| ||| | ||| || Sbjct 23646208 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACC 23646149 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472 || | || || |||||| | || || || || ||||| ||||||| Sbjct 23646148 TCCATTGTAATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCA 23646103 >seq9 Length=54061371 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | | || ||||| ||| Sbjct 30845415 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCAGCTTGCCTGCAAAG 30845356 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||||||||||||||| || || ||||| || Sbjct 30845355 ATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTAGCCTTCACATTC 30845296 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || | || || ||||| ||||| || ||||| ||||| | Sbjct 30845295 TCAATGGTGTCACTGAGCTCCATCTCCAGGGTGATAGTCTTGCCAGTCAGGGTCTTCATA 30845236 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 30845235 AAGATCTGCATTTTG 30845221 >seq16 Length=44863414 Score = 89.7 bits (98), Expect = 1e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 288315 TCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTC 288374 ||| ||||| | ||| || || || |||||||| | || ||| | || |||||||| Sbjct 42573782 TCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 42573841 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434 ||||||||||| || ||||| || |||||||||| || | ||| | || ||| | Sbjct 42573842 CTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCCAGCAT 42573901 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||||| || || || || ||||| |||||||| Sbjct 42573902 AACAGTCTTCCTCGTAAGGGTTTTTACGAAAATCTGCAT 42573940 >seq1 Length=90267253 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/135 (76%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 288314 GTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG--GATTCC 288371 |||| ||||| | ||| || || || |||||||| | ||| ||| || || || ||| Sbjct 20659495 GTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGA---TCAGGAGGAATCC 20659439 Query 288372 TTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAG 288431 ||| ||||||||||| || || || || |||||||||| || | | ||| || ||||| Sbjct 20659438 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTC-CGAGGTTCAACCTCGAG 20659380 Query 288432 CGTGATCGTCTTCCC 288446 ||| || |||||||| Sbjct 20659379 CGTAATAGTCTTCCC 20659365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179434592415154