Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq19 82.4 9e-11 >seq19 Length=38427206 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 126079 GATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAAT 126138 ||| |||||||| || || || || ||||||||||| | |||||| |||||||| || Sbjct 3916238 GATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCTTTAACCAGAATAT 3916297 Query 126139 CGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAA 126188 ||| ||| || || |||||||| ||||| |||||| || || |||| Sbjct 3916298 AGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCAA 3916347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597245008582440