Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq83 132 5e-26 seq2 95.1 1e-14 >seq83 Length=7591375 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | ||||||| ||||| Sbjct 414024 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCT 413965 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || | || |||||||||||| || || || || || ||| Sbjct 413964 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCT 413905 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || ||||| || | || | |||| Sbjct 413904 TGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 413845 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| |||| || || ||||| || |||||| Sbjct 413844 TTGCCCGTCAGGGTCTTCACGAAGATCTGCATT 413812 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| | ||||| || || | || || || || || |||||||| || | Sbjct 414268 ACCTCCCCTCAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 414209 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||||| ||||||| ||||||||||||||| | || | || |||||||||||| || Sbjct 414208 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGG 414149 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||| ||| ||| | || |||| || ||||| Sbjct 414148 GATGCCCTCCTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 414089 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| || || ||||| || ||||| Sbjct 414088 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 >seq2 Length=69027483 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| |||||| || || || || ||||||||||| || | Sbjct 23646329 ACCACCACGAAGCCTCAGCACCTGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGA 23646270 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 ||||| || | ||||| || ||||| | ||| | || || | || || || ||||| Sbjct 23646269 CACGGTACGTCCATCTTCCAGTTGCTTATCAGCAAACATCAGTCTTTGATGATCAGGAGG 23646210 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | ||||| || || || Sbjct 23646209 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAAC 23646150 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCA 64442 || | || | ||||| | || | |||||||||||||| |||| Sbjct 23646149 CTCCATTGTAATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCA 23646103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499553970820920