Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq25 89.7 5e-13 >seq25 Length=31340621 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || |||||| || || ||||| ||||| | | Sbjct 4762717 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCA 4762776 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || || || ||||| || |||| || || ||| || ||||| Sbjct 4762777 AAGATCAGTCTTTGCTGATCAGGAGGAAT-TCTTCCTTATCCTGGATCTTGGCTTTTACA 4762835 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | | || ||||||| || || || || || || |||||| Sbjct 4762836 TTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTATTAGTCTTCCCTGTAAGGGTTTTT 4762895 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 4762896 ACAAAAATCTGCAT 4762909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496172185698960