Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq30 141 1e-28 seq48 125 1e-23 >seq30 Length=30016984 Score = 141 bits (156), Expect = 1e-28 Identities = 212/301 (70%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| | | | || ||||| |||||||| || || |||||||||||||| | Sbjct 8155038 AACACTGAATGAGACGAAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATTGA 8154979 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | || || || || || || || ||||| || ||||| || Sbjct 8154978 GGCAGTGTTAATGATCTTAAAGCCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAATAGTG 8154919 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || || || || ||| || ||||||||||| || || || || | || | Sbjct 8154918 AGGAGAACATATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCTCCAATTTCCAC 8154859 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| ||||||| ||||||||| | ||||| || ||||| || | || | ||| |||| Sbjct 8154858 CATGGTCTCACCAAAGATGGCATCAGGACGAGGCTTTTCCACCAGGAGGGCAGGATAGAA 8154799 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | || || | ||| |||||||| ||||||||||| || || || ||||| || || Sbjct 8154798 CTCCATGGCATCAATGTCACCATAGAGTGCTTCCAACTCTGCGGCCATTTCCTTTTCTCC 8154739 Query 9175 T 9175 | Sbjct 8154738 T 8154738 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 10388 CACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTAT 10447 |||||||||| || | || || ||||||||| | || ||||| || | ||| |||| Sbjct 8151700 CACCTTTCACACCCATGGGTGTTGGGCAGTCATCTGCCACAGGAGGAAGGGCTCTGGTAT 8151641 Query 10448 AATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCG 10507 | ||||| || || || || ||||||||| | ||||||||||| | | ||||| | Sbjct 8151640 AGTAGGAGAGGTTAGAGAAGGCTTCCCAGTTTTTGTAGCCATAGTGCACATTGTAAGTTG 8151581 Query 10508 GGGGACTGTCAATCATCTCGGACCTGGCT 10536 | ||||||||||| | | || |||||| Sbjct 8151580 GTGGACTGTCAATTAAATGTGATCTGGCT 8151552 >seq48 Length=15743623 Score = 125 bits (138), Expect = 1e-23 Identities = 177/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| || ||||| || || ||||| ||||| |||||||||||| Sbjct 8800134 GTGGCCGTGTTGACAATGTTGAAGCCTACCTCGCCACCGAATGTGCTTGGTTTCCAGTAC 8800193 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || ||||||||| || | | || || || | |||||| |||||||| | ||| Sbjct 8800194 TCTGGAGAGCAGATGGGATTTCCTAGAAGACCCTTAAGGGAAAAGGGAGCCCCGATCTCT 8800253 Query 9053 ATGATGCTCTCACCGAAGATGG-CACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTA 9111 || || ||||| || || |||| ||| | || ||||| | | | || | ||| Sbjct 8800254 ATCATACTCTCCCCAAAAATGGAGTTCGGTAGGC-ACTTTTCAAGCAGCAGCCCCGGGTA 8800312 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||| | ||| |||| ||| ||||| || | |||||||| || || ||||||||||| Sbjct 8800313 GAATTCCAAAGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 8800372 Query 9172 ACCTAC 9177 ||||| Sbjct 8800373 TCCTAC 8800378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723596435296200