Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9 125 2e-23 seq17 122 2e-22 seq25 120 7e-22 seq16 107 5e-18 seq83 104 6e-17 seq2 100 7e-16 seq34 95.1 3e-14 >seq9 Length=54061371 Score = 125 bits (138), Expect = 2e-23 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| ||||||||||| | ||| | |||||| Sbjct 30845436 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 30845377 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||| |||| || || |||||||| | ||||||||| ||| ||| |||||| ||| Sbjct 30845376 TCCAGCAGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 30845317 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | || | |||| ||||| ||| Sbjct 30845316 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAGGGTGATAGTC 30845257 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || |||| ||| || || |||||| Sbjct 30845256 TTGCCAGTCAGGGTCTTCATAAAGATCTG---CATTTT 30845222 >seq17 Length=43943611 Score = 122 bits (134), Expect = 2e-22 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || ||||| || |||| ||||||||||| | ||| | |||||| Sbjct 21311337 AGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 21311396 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||||| || || || ||||| | ||||||||| || ||| |||||| ||| Sbjct 21311397 TCCAGCTGCTCCCCTGCAAATATGAGTCTCTGCTGGTCAGGGGGAATGCCTTCTGTATCC 21311456 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | | |||| | | || || |||| ||| | ||| Sbjct 21311457 TGGATCTTGGCCTTCACATTCTCAATGATGTCATTGGGCTCCACCTCCAGGGTGGTGGTC 21311516 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || ||||||||||| || || |||||| Sbjct 21311517 TTGCCAGTCAGGGTTTTCACAAAGAT---GTGCATTTT 21311551 >seq25 Length=31340621 Score = 120 bits (132), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||| ||||| ||||| || || || |||||||| || | ||||||||||| |||||| | Sbjct 4762692 AAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACG 4762751 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||| ||||| || || ||||| || | ||||| || ||| |||| |||| Sbjct 4762752 TCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATT-CTTC 4762810 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| ||||| || || ||| | ||||| | | ||| || || | || Sbjct 4762811 CTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGT 4762870 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || || || ||||| |||||||| || Sbjct 4762871 ATTAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTG 4762906 >seq16 Length=44863414 Score = 107 bits (118), Expect = 5e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 |||| ||||| | ||| || | || |||||||| || | | ||| ||||| |||||| | Sbjct 42573721 GAAGCCTCAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTAC 42573780 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 |||||||||||| ||||| || || ||||| || | ||||| || ||| |||||||| Sbjct 42573781 ATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 42573840 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| ||||| || || ||| | ||||| | | ||| | |||| | Sbjct 42573841 CCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCCAGCA 42573900 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | | ||||| | ||| || ||||| || ||||| || Sbjct 42573901 TAACAGTCTTCCTCGTAAGGGTTTTTACGAAAATCTG 42573937 >seq83 Length=7591375 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| |||| ||||||||| | || || | || || Sbjct 414025 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 413966 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| | | ||||||||| || || || || || Sbjct 413965 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 413906 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 413905 TTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 413846 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| || || || Sbjct 413845 CTTGCCCGTCAGGGTCTTCACGAAGATCTG 413816 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || |||||||| |||| ||||||||| | || || | || || Sbjct 414253 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 414194 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| | | ||||||||| || || || || || Sbjct 414193 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 414134 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 414133 TTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 414074 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || ||||| || || || Sbjct 414073 CTTGCCCGTCAGGGTCTTCACGAAGATCTG 414044 >seq2 Length=69027483 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| ||||| || | || || || |||||||| || | ||||||||||| || || Sbjct 23646322 CGAAGCCTCAGCACCTGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACACGGTA 23646263 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| ||||| | || || || || | || || || ||| ||||||| Sbjct 23646262 CGTCCATCTTCCAGTTGCTTATCAGCAAACATCAGTCTTTGATGATCAGGAGGAATTCCT 23646203 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | || || | | ||| || |||| Sbjct 23646202 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACCTCCATT 23646143 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| | || || ||||| || ||||| || Sbjct 23646142 GTAATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTG 23646105 >seq34 Length=22531781 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| | ||||| ||||| ||||||||||| | |||||||| || |||||| Sbjct 4178330 CGAAGTCTCAATATAAGGTAAAGAGTGGACTCCTTTTGAATGTTGTAGTGAGACAAAGTG 4178389 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| | | | || || ||||| || | ||||| | ||| ||| ||| Sbjct 4178390 CATCCATCTTCCAGTTTCCTGCCAGCAAAGATTAGCCTTTGCTGATGAGGAGGAATGCCT 4178449 Query 199529 TCTCGCTCCTGAATCTT 199545 | | ||||| |||| Sbjct 4178450 TTTATATCCTGGGTCTT 4178466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178701928959381