Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq161 181 1e-40 seq83 154 1e-32 seq17 105 7e-18 seq82 100 3e-16 seq9 93.3 4e-14 seq30 87.8 2e-12 >seq161 Length=830332 Score = 181 bits (200), Expect = 1e-40 Identities = 609/948 (64%), Gaps = 35/948 (4%) Strand=Plus/Plus Query 132550 TAAAAGTCCGCATCCAAAGTAAAGGTGTCGTCCTTGGCAA---ACATCACGCCAAATTTT 132606 ||||||| |||||||| ||||| | | || | | | ||||||| || | | Sbjct 529769 TAAAAGTTAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCCATCCTC 529828 Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 ||||| | ||| || | |||||||| || ||||| || || || | ||||| | | Sbjct 529829 TGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCC 529888 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGC 132726 ||||| || || || || || ||| | |||| | | ||| || | | ||| Sbjct 529889 ATAAAGTCAAATGGATTTTCTACTTTGAAAACCTTGTTAAAGCCCAGCTCCAGCATAAGC 529948 Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGC 132786 || || ||||| || || ||||| ||| ||| |||||| | || | || | Sbjct 529949 CTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCTTC 530008 Query 132787 ACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCC 132846 | |||| ||||| ||||| || || || || | ||| || | | | | |||| Sbjct 530009 TCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCATTGATAATTGTTTCT 530068 Query 132847 CTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCG 132906 | || | | | | || |||| || || |||||||||| ||| |||||||| Sbjct 530069 TTTACTCTCTGCTCTGATGGTTTGTGCAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCA 530128 Query 132907 CAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGG 132966 || || |||||||| || || ||| ||||| ||| || || | ||| ||||| || Sbjct 530129 CAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 530188 Query 132967 CCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACG 133026 || ||||| |||||| |||||||||| ||||| || Sbjct 530189 CCTCGTTTCTTGAGCA-----------------------GAAAAGAAGATTCCCTCCACA 530225 Query 133027 GCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGC 133086 || || || || || | || || || | || || |||||| | ||| | |||| Sbjct 530226 GCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAACGCAAG 530285 Query 133087 GCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGT 133146 ||||| ||||| || | || || || ||||| ||| | ||||| || || | | | | Sbjct 530286 GCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATTGAAGAGA---AAT 530342 Query 133147 TTC---TCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGT 133203 | | |||| ||| | ||| ||||| || ||| ||||||||| || ||| Sbjct 530343 TCCCTTTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGT 530402 Query 133204 ACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCT 133263 | ||| |||||||| ||||| ||||| || || | || || || | || |||||| Sbjct 530403 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTTCT 530462 Query 133264 TGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGC 133322 || || ||| ||||| |||| ||| || || || ||||| || || || || | || || Sbjct 530463 TG-GCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGCAGAGAAAGC 530521 Query 133323 CAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTC 133382 ||| | ||| || |||| | || | |||| | ||||||| | |||| Sbjct 530522 CAGAAAGTGGGATATAAAATATCATTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTC 530581 Query 133383 CTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACT 133442 | |||| || ||||||||||| | |||||||| || ||||| ||||| || |||| Sbjct 530582 CCTGGA-AGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTACACATCTG 530640 Query 133443 CCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTT 133490 ||| || | |||| || ||||| || | || |||| |||||| Sbjct 530641 CCAGATACCATGGTATTCCATAGGAAAGATGGCCAAGCGGCAGGGGTT 530688 >seq83 Length=7591375 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || |||||||| ||||||||| | || || ||| ||| Sbjct 413812 AATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 413871 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| ||||| ||||| || ||| ||||||| Sbjct 413872 TGACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCA 413931 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 413932 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAA 413991 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| ||||||||||| | ||||| || Sbjct 413992 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTCAGAGGTGG 414039 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| ||||||||| | || || ||| ||| Sbjct 414041 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 414100 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| ||||||| Sbjct 414101 GACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCAG 414160 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || ||||| |||||||| |||| ||||||||| |||||||||| Sbjct 414161 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 414220 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || ||||| |||||||||| ||||| || || Sbjct 414221 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCTTGAGGGGAGG 414267 >seq17 Length=43943611 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || ||||| || || ||||| |||| |||| | || || ||| || Sbjct 21311551 AAAATGCACATCTTTGTGAAAACCCTGACTGGCAAGACCACCACCCTGGAGGTGGAGCCC 21311492 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| || | ||| || |||||| | ||| Sbjct 21311491 AATGACATCATTGAGAATGTGAAGGCCAAGATCCAGGATACAGAAGGCATTCCCCCTGAC 21311432 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| | ||||| | || || | |||||||| || | ||||| || |||||| Sbjct 21311431 CAGCAGAGACTCATATTTGCAGGGGAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 21311372 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || | || ||||| |||| || ||| |||| || ||| Sbjct 21311371 AACATCCAGAAAGAGTCCACCCTGCACCTGGTTCTTCGTCTGAGGGGTGGC 21311321 >seq82 Length=7573503 Score = 100 bits (110), Expect = 3e-16 Identities = 177/254 (70%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 133188 ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTC 133247 ||| ||||| || |||| ||| |||||||| ||||| ||||| | || || | || || Sbjct 1078706 ATATATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCCGGCTTC 1078765 Query 133248 GACCACCTGCACTTCTTGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTCGC 133306 | | || || ||||| || ||| |||| ||||||||||| | | ||||| || | Sbjct 1078766 TATAATTTGAACCTCTTG-GCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCAC 1078824 Query 133307 TGGCGGCGAAA-AAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 ||| ||| || || || || || || |||| | || | |||| | | Sbjct 1078825 ATGCGTTCAAAGAAAGCTAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCC 1078884 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 ||||||| | |||||||||| || ||||||||||| | ||||| || || |||||| Sbjct 1078885 TCCCAGTGCTGACTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGAAGCCTCG 1078944 Query 133426 GCTTTTTTGTACAT 133439 ||||| || ||||| Sbjct 1078945 GCTTTCTTATACAT 1078958 >seq9 Length=54061371 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || | || || || || ||||| || |||||| | || | ||| | Sbjct 30845222 AAAATGCAGATCTTTATGAAGACCCTGACTGGCAAGACTATCACCCTGGAGATGGAGCTC 30845281 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| || ||||| || ||||| | ||| Sbjct 30845282 AGTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGATAAAGAAGGCATTCCTCCTGAC 30845341 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | || ||||| | |||||| || | ||||| || |||||| Sbjct 30845342 CAGCAGAGGCTCATCTTTGCAGGCAAGCTGCTGGAAGATGGCCGCACTCTTTCTGACTAC 30845401 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || | || ||||| |||| || | | |||| || ||| Sbjct 30845402 AACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTTCCTCTGAGGGGTGGC 30845452 >seq30 Length=30016984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| || | |||||| ||| Sbjct 13544296 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCAAGGTCGAGCCCAGT 13544355 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| ||| | | |||| ||||| || | | || | Sbjct 13544356 GACACCATCGAGAATGTCAAAGCGAAATTTCAAGACATGGAGGGCATCTCACCTGAT-AG 13544414 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 |||| || || | || || ||||||||||| || | ||||| ||| || |||||| Sbjct 13544415 CAGCATCTGATATTTGCAGGTAAACAGCTGGAGGATGGCCGCACTCTCCCAGATTACAAC 13544474 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || || | |||||||| | ||||||| ||| Sbjct 13544475 ATCCAGAAAGAATCCACTCTATACTTGGTGCTTCACCTGAGAGGTGGC 13544522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500081874837120