Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq21 95.1 1e-14 >seq21 Length=35249227 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||||| ||||| || || ||| | ||||||| ||||| || | | |||| Sbjct 92254 CCTCATGTTGCACATGGCATGTGTATCTCTGCTCTTCCCCAGCAGGCACCACCACAGCTG 92313 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 ||||||||||||| |||||||| || || || ||||| ||||| || ||| | | Sbjct 92314 CCCACTTCTGAAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTTCTGAA 92373 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 || | | |||| | || | ||||| || | ||| || ||| ||| |||||||| || Sbjct 92374 TCTGGTCCTCTCCATCCCTCTGCCAGGTCAGGGTGATCTCCTTAGGGTAGAAGCCCAAGG 92433 Query 529 CCCAACA 535 |||| || Sbjct 92434 CCCAGCA 92440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397676702167608