Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq138 149 1e-30 seq9 136 9e-27 seq83 134 3e-26 seq17 131 4e-25 seq1035 118 2e-21 seq16 111 3e-19 seq2 109 1e-18 seq34 87.8 4e-12 seq12 86.0 1e-11 >seq138 Length=1287892 Score = 149 bits (164), Expect = 1e-30 Identities = 162/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || ||||||||||| | |||||| | |||||||| Sbjct 343418 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTACGGCCATCTTCC 343477 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| ||||| ||||| || | || ||||| || |||||||||||||| || || Sbjct 343478 AACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGG 343537 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| ||||| || ||||| | ||| Sbjct 343538 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 343594 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || || || | ||||||| Sbjct 343595 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTT 343628 >seq9 Length=54061371 Score = 136 bits (150), Expect = 9e-27 Identities = 159/213 (75%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||||| || | |||||| | |||||||| Sbjct 30845433 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 30845374 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||| |||| ||||| ||||| || | || ||||| ||||||||||||||||| || || Sbjct 30845373 AGCAGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGG 30845314 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || ||| || ||||||||||||| | || | |||| || ||||| | |||| Sbjct 30845313 ATCTTAGCCTTCACATTCTCAATGGTGTCACTGAGC--TCCATCTCCAGGGTGATAGTCT 30845256 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | || |||| || || | || | ||||||| Sbjct 30845255 TGCCAGTCAGGGTCTTCATAAAGATCTGCATTT 30845223 >seq83 Length=7591375 Score = 134 bits (148), Expect = 3e-26 Identities = 173/236 (73%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || ||||| || |||||||| || || || ||||| |||| || || Sbjct 414034 TCTGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 413975 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||| ||||| |||||||| || || ||||| | | || ||||| || || ||||| Sbjct 413974 GCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCC 413915 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || |||||||| || || |||||| |||||||||||||| ||| ||||| || Sbjct 413914 CTCCTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 413858 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT-TATGGTTAC 195150 ||||| | ||||| || |||| || || ||||| | |||||| | | ||||| Sbjct 413857 CAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTATCTAGTTAC 413802 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || || ||||| |||| || || | ||| ||||| Sbjct 414249 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCC 414190 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || ||||| || || ||||| || |||||||| Sbjct 414189 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCTTGG 414130 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| ||||| || ||||| | ||| Sbjct 414129 ATCTTCGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 414073 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 414072 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 >seq17 Length=43943611 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || ||||||||||| || || ||||| || | |||||| | |||||||| Sbjct 21311339 AACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 21311398 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||| ||||| || || |||| || ||||| || |||||||||||| | || || Sbjct 21311399 CAGCTGCTCCCCTGCAAATATGAGTCTCTGCTGGTCAGGGGGAATGCCTTCTGTATCCTG 21311458 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || ||||||||| |||| ||||| || ||||| ||||| Sbjct 21311459 GATCTTGGCCTTCACATTCTCAATGATGTCATTGGGCTCCACCTCCAGGGTGGTGGTCTT 21311518 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || |||| ||||| || || | ||||||| Sbjct 21311519 GCCAGTCAGGGTTTTCACAAAGATGTGCATTT 21311550 >seq1035 Length=9571 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 194977 GTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATG 195036 ||||| || ||||| | |||||||| || ||||| | || ||||||||| || || || Sbjct 1 GTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATA 60 Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 ||||| |||||||| || || |||||| || ||||||||||| ||| ||| ||||| Sbjct 61 CCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCC 120 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | || | ||||| || |||||||| || ||||| Sbjct 121 AAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 155 >seq16 Length=44863414 Score = 111 bits (122), Expect = 3e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 || |||| | ||| ||| | |||||||| || ||||| ||| || | | ||| | Sbjct 42573723 AGCCTCAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTACAT 42573782 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || |||||||| || ||||| |||| ||| || || |||||||| ||||| Sbjct 42573783 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 42573842 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || || || || || || |||||||| ||| | || || || Sbjct 42573843 TTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCCAGCATA 42573902 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTA 195143 || ||||| | || | ||||||||||| | ||||| || Sbjct 42573903 ACAGTCTTCCTCGTAAGGGTTTTTACGAAAATCTGCATCTA 42573943 >seq2 Length=69027483 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| |||||||| || ||||| ||||| || | | || | |||||||| || ||| Sbjct 23646304 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACACGGTACGTCCATCTTCCAGTTGC 23646245 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||| | || || || |||| ||| || || |||||||| ||||| || || || || || Sbjct 23646244 TTATCAGCAAACATCAGTCTTTGATGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 23646185 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || || || ||||| ||| || || | |||| ||||| |||| Sbjct 23646184 GCCTTTACATTTTCTATAGTATCCGAGGGTTCAACCTCCATTGTAATAGTCTTCTCTGTA 23646125 Query 195118 AAAGTTTTTACGAACACTTGCATTTATGGT 195147 | ||||||||||| | |||| ||||| Sbjct 23646124 AGGGTTTTTACGAAAATCTGCAGCGATGGT 23646095 >seq34 Length=22531781 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| | ||||| |||||||||||| |||||||| ||||| | | | ||| | Sbjct 4178333 AGTCTCAATATAAGGTAAAGAGTGGACTCCTTTTGAATGTTGTAGTGAGACAAAGTGCAT 4178392 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTT 195040 |||||||| || | | | || || ||||| || | ||| || | ||||||||||||| Sbjct 4178393 CCATCTTCCAGTTTCCTGCCAGCAAAGATTAGCCTTTGCTGATGAGGAGGAATGCCTT 4178450 >seq12 Length=50657735 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/209 (69%), Gaps = 16/209 (8%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||||| | || |||||||| | ||||| | ||||| || Sbjct 48371015 ACCAGGTGCAGGCTGAACTCTTT--GGATGTTGTAATCTGAGAGAGTGCAGCCATCCTCC 48370958 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || ||||| || || || | ||| || ||||||||||||||||| Sbjct 48370957 AGCTGTTTGCCTGCAAATATCAGACATTGCTG----------ATGCCTTCTTTGTCTTGG 48370908 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||| |||||| |||||| |||| |||| ||||| | ||||| Sbjct 48370907 ATTTTGGCTTTGACATTCTCAGCGGTGTC---ACTTCGAACTT-GAGGGTGATGGTCTTG 48370852 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||| ||||| || || | ||||| Sbjct 48370851 CCCATCATGGTTTTCACAAAGATCTGCAT 48370823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109274867866481