Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq83 123 2e-23 seq30 96.9 2e-15 seq138 84.2 1e-11 seq17 84.2 1e-11 >seq83 Length=7591375 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 414267 CCTCCCCTCAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 414208 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || | || |||||||| || |||||||| || | | |||||||| | || Sbjct 414207 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 414148 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| |||||| ||||| || || || | |||| || ||| | Sbjct 414147 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCA 414090 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || ||||| || |||||||| ||||||||||| Sbjct 414089 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 Score = 109 bits (120), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || ||| Sbjct 414021 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCC 413962 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || | | |||||||| | || | ||||||||||| Sbjct 413961 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCTTGG 413902 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| ||||| || || || | |||| || ||| || || | ||| ||||| | Sbjct 413901 ATCTTCGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCT 413844 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||||||| ||||||||||| Sbjct 413843 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 413813 >seq30 Length=30016984 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||||| | ||| ||||||||| ||||| || || | || | || |||| ||| Sbjct 13544503 ACCAAGTATAGAGTGGATTCTTTCTGGATGTTGTAATCTGGGAGAGTGCGGCCATCCTCC 13544444 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || |||||||| || | |||| || | | | |||||| |||| | Sbjct 13544443 AGCTGTTTACCTGCAAATATCAGATGCTGCTA-TCAGGTGAGATGCCCTCCATGTCTTGA 13544385 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 | ||| |||||| || || || | |||| || ||| || | || ||| ||||| | Sbjct 13544384 AATTTCGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCTTGAGGGTGATGGTCT 13544327 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||||||||||||||| Sbjct 13544326 TGCCTGTCAGGGTCTTCACAAAGATCTGCAT 13544296 >seq138 Length=1287892 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | |||| ||| | ||| |||||||| || || || || ||| Sbjct 343400 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAA 343459 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||| ||| || || ||||| || || | |||||||| | || Sbjct 343460 AGAGTACGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 343519 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || || || ||||| || || || || || | |||| || ||| | Sbjct 343520 ATGCCTTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCCA 343577 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | ||| ||||| || || || || |||||||||||||||||||| || Sbjct 343578 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 343629 >seq17 Length=43943611 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | ||||| ||| | ||| |||||||| ||||| ||||| ||| Sbjct 21311322 CCACCCCTCAGACGAAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 21311381 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| | || |||||||| |||| |||||||| | || Sbjct 21311382 AGAGTGCGGCCATCTTCCAGCTGCTCCCCTGCAAATATGAGTCTCTGCTGGTCAGGGGGA 21311441 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT-ATCGAT-TCACCGGCCTCAA 34932 | || || | || ||||| || || || || | ||| ||| || ||| | Sbjct 21311442 ATGCCTTCTGTATCCTGGATCTTGGCCTTCAC--ATTCTCAATGATGTCATTGGGCTCCA 21311499 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | ||| |||| || || || || || ||||||||||| ||||| || Sbjct 21311500 CCTCCAGGGTGGTGGTCTTGCCAGTCAGGGTTTTCACAAAGATGTGCATTTT 21311551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324576061027704