Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq161 318 7e-82 seq67 289 3e-73 seq58 250 3e-61 seq13 172 6e-38 seq19 129 7e-25 seq7 114 1e-20 seq12166 111 2e-19 seq4 102 9e-17 seq87 100 3e-16 >seq161 Length=830332 Score = 318 bits (352), Expect = 7e-82 Identities = 632/933 (68%), Gaps = 36/933 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 |||||| | | ||||||| | ||||||||| ||| || || | ||| |||||||| Sbjct 529768 TTAAAAGTTAGCATCCAAGGTAAAAGAATTATCTG--TTGGATTCGACATCACTCCCATC 529825 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| | | | ||||| || |||||||| ||||| || || |||| ||| ||| Sbjct 529826 CTCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTC 529885 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| ||||||||||||| ||| || | | || || || || | || | | Sbjct 529886 TCCATAAAGTCAAATGGATTTTCTACTTTGAAAACCTTGTTAAAGCCCAGCTCCAGCATA 529945 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 || ||||| || ||||| | ||| || ||||||| | |||||||| || |||| Sbjct 529946 AGCCTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGC 530005 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 || |||| | || ||||| || || | |||||||| | || || | || ||||| Sbjct 530006 TTCTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCAT-TG--ATAATT 530062 Query 18910 GATAC---AACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCA 18966 | | | ||||| | || || || || || ||||| ||||||| || ||| Sbjct 530063 GTTTCTTTTACTCTCTGCTCTGATGGTTTGTGCAGCAGGTGTTTGAACATCAGGCAGGCA 530122 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 || ||||| |||| ||||| ||| | || || | |||||| |||||||| | |||||| Sbjct 530123 AAGTCACAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGC 530182 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 |||||||||| ||| || | |||||||||| || || Sbjct 530183 ATCAGTCCTCGTTTCTTGA-----------------------GCAGAAAAGAAGATTCCC 530219 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146 || || || ||||| || || | | ||||||||| |||| || || | |||| | Sbjct 530220 TCCACAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAA 530279 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 || |||||||| || ||||| || ||||| |||||||| | || | ||| || ||| Sbjct 530280 CGCAAGGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATTGAAGAGA 530339 Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 | | || | | ||||||| || | || || | | ||| |||||||| ||| Sbjct 530340 AATTCCCTTTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAA 530399 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || || ||||| || || || || || || || |||| | |||||||| || || ||| Sbjct 530400 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACT 530459 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || | ||||| || |||||||| ||||| ||||| |||||||| || ||| | || Sbjct 530460 TCTTGGCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGCAGAGAAA 530519 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAAT 19445 || | | || ||||||| | ||| || | | || | | || ||| | | ||| Sbjct 530520 GCCAGAAAGTGGGATATAAAATATCATTCCTCAG-GCTTCAGGGCTTCCCAGTGCTGAAT 530578 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 || | || | | | || || || |||||||||| |||||||| ||||| ||| |||| Sbjct 530579 GTCCCTGGA-AGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTACACAT 530637 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATAT 19538 | ||| ||| || | |||| |||||||| || Sbjct 530638 CTGCCAGATACCATGGTATTCCATAGGAAAGAT 530670 >seq67 Length=10555288 Score = 289 bits (320), Expect = 3e-73 Identities = 633/941 (67%), Gaps = 14/941 (1%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTT 18671 ||||||||| ||||||| | ||| ||||||| | | ||| ||| | | Sbjct 3668944 TTAAAAATCTGCATCCAAGGTAAAGACATTCTCTGTAGT----TTCTAAACTGCAGAATG 3668889 Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 ||||| || | |||| | || ||||||||||| ||||| || ||||| || || ||| Sbjct 3668888 CTGATACTCTGAAACT-TGTTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTC 3668830 Query 18732 CATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAG 18791 |||||||||||| ||||||| | | | | | | ||| |||||| | ||| | |||| Sbjct 3668829 CATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCACAAGTAA 3668770 Query 18792 TCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTT 18851 ||| || |||||||||| |||||| | |||||| | |||| ||||| | || | Sbjct 3668769 TCTTTCAGCTACAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCC 3668710 Query 18852 AACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGA 18911 ||| || | | ||||| | ||| || || || || || || || | || || Sbjct 3668709 AACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATC-- 3668652 Query 18912 TACAACTCTATCTTCATTAGGAGGGT-ATAGAAGATGT--TTAAACATCAAACATGCAAA 18968 | | | | | ||| | | || | || | | || | |||||| | || ||||| Sbjct 3668651 TCCCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAA 3668592 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||| | | ||| | || ||||| | |||| ||||| ||||||| | ||||| || Sbjct 3668591 GTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGAT 3668532 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 | ||||| || ||||||||||| |||| |||||| ||||| || ||||| || ||||| Sbjct 3668531 GGGACCTCTCTTCTTTAACCAGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTC 3668472 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 || || | || || | |||||| ||| || ||| | ||| |||||| Sbjct 3668471 CACAGCACTGATGGCCACCACTCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCATCA 3668412 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 ||| ||||| || | || || || || |||||||||| | || | |||||||| | | Sbjct 3668411 CAGGGCCCAGTCTGTTTTTTTCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAAAA 3668352 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268 | | | | | |||| | | | |||||| | |||||||| || | ||| || Sbjct 3668351 TTTCCCTTTCTTGGGATCTCTGATTCTAGTATCTATTAGCAAACTGTATATCTTTGAGTG 3668292 Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || ||| | ||| || ||||| || || ||||| | || |||| | || || || Sbjct 3668291 AACATTCTTTATGAGAATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACCTC 3668232 Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC---AAAAAA 19385 || ||| || || |||||||||||||| | |||||||||| | ||| |||||| Sbjct 3668231 CTGACTAAAGCTCTCCACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAAAAAAAA 3668172 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAAT 19445 ||||| | ||| | ||||| || |||||||| | | | ||| | | | | Sbjct 3668171 AGCTAAGATATGAGAGAGAAAATAATTCTCATCTGATTTAAGCTTGTTCTAGTGAAGGAG 3668112 Query 19446 ATCTTTAGATAAA-TCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 ||| || |||||| || || ||||| ||||||| || || |||| ||| | || ||||| Sbjct 3668111 ATCCTTTGATAAAGTCAACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTCATACA 3668052 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACAAAT 19545 | ||||| ||||| | || || || |||||||| |||||| Sbjct 3668051 TTTTCCAAATATCGGGGTACTGAATTGGAAATATGACAAAT 3668011 >seq58 Length=13050397 Score = 250 bits (276), Expect = 3e-61 Identities = 638/945 (68%), Gaps = 32/945 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| |||||| ||||||| | |||||||||| || || || || ||| ||||||| Sbjct 9035715 TTAGAAATCAGCATCCAAGGTAAAAGAATTCCCTG--TTGGATTTGACATCTCTCCCATC 9035772 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| || | ||| | || |||||||| ||| | || | ||| ||| ||| Sbjct 9035773 CTCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCTG-TGAAATATTC 9035831 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA-TTC-TAATA 18787 |||||||| ||| ||||||||| ||| | | | || | || || | ||| | ||| Sbjct 9035832 TCCATAAAGTCAGATGGATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCTTCATCATA 9035891 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 || || || || || |||| |||||| ||||||| | || ||||| || | | Sbjct 9035892 --AGCCTGTCTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTCATCCCAGTGA 9035949 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA- 18906 | || ||||| | || || | || || || ||||||| | || || | ||||| | Sbjct 9035950 ACTTCACAGGCAAGGCCTCCATGAGGAACTCCTGTTCTAAGCTGACAGCAT-TGATAAAT 9036008 Query 18907 ATAGATACAACTCTAT-CTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965 || | ||||| | || || | || || ||| || ||||| ||||||| || || Sbjct 9036009 ATTTCTTTTACTCTCTGCTCCAAT-GGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGC 9036067 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 | | |||||| ||| ||||| ||||| || || | |||| | |||| | || ||||| Sbjct 9036068 AGAGTCACAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAACT--TAGGCCAGG 9036125 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||||| ||| | ||| || ||| ||||||| || |||| || || | ||||| | || Sbjct 9036126 CATCAATCCCCATTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTTTCC 9036185 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || || ||||| || || | | ||||| || |||| || || | |||||| Sbjct 9036186 TTCCACAGCGGCAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCCCCAATCCA 9036245 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 | || || ||| | ||||| |||||| | || ||||| || || | ||| || || Sbjct 9036246 ATGCAAGACCTAATTTACTTTCTTCTTTACATAAGGTATTGTTTCAATGGCATTGAAGAG 9036305 Query 19206 ATACATACGCTCATCTGT---ATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 | | | | || ||| | |||||||| || || || | | ||| |||||||| Sbjct 9036306 AAA--TTCCCTT-TCTTTGAAATCTTTAAG---TG--TCAATAAGGAGACTATACATTTC 9036357 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322 |||| | ||||| || || || || || | || ||||| ||||||| || || Sbjct 9036358 ACAATGTAG-TTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTG 9036416 Query 19323 TACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 ||||| | |||| || |||||||||||||| | ||| |||||||| |||||||| Sbjct 9036417 AACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAA 9036476 Query 19383 -AAATGC-TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCA 19440 |||| | |||| ||| ||||||| | | | || || || | | |||| | | Sbjct 9036477 GAAATTCATAAT-TATGAGACATAAAATATCATACCTCAGA-TTTCAGGGCTTCCTAGTA 9036534 Query 19441 T-TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 | ||| || || || | | |||| | || ||||| |||| ||| | || || || || Sbjct 9036535 TAGAATGTCCTTGGAAATAGCTACCACCTCTTCTGTCAAAAAGGAACCTTCAGCCTTCTT 9036594 Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | | || | ||| |||||| | ||| |||||||| | ||||| Sbjct 9036595 AGAAATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAA 9036639 >seq13 Length=48154242 Score = 172 bits (190), Expect = 6e-38 Identities = 591/902 (66%), Gaps = 56/902 (6%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCT--TCATTAGA-ATTCAT-TACTCCC- 18666 ||| |||||| ||||||| | || |||||||||| || | || | ||| ||||| | Sbjct 23471166 TTAGAAATCAGCATCCAAGGTAAGAGAATTCTCTAATCTTCTGATACTCAACTACTCTCC 23471107 Query 18667 -ATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATAT 18725 || || ||||| || | ||||| || |||||||| ||||| || || || | ||| || Sbjct 23471106 AATCTTCTGATACTCAACTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAAT 23471047 Query 18726 ACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAA 18785 | | ||||| |||| ||| |||| ||| | | || | | | || | || | Sbjct 23471046 ATTCTTCATAATGTCAAGTGGGTTTTCTACTCTGAAAATCTCACTAGAGCCCAGTTTCAG 23470987 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTAT 18845 | || || ||||| ||||| | ||| | ||||||| | || ||||| || || Sbjct 23470986 CATAAGCCTGTCCGCCACAAACTCAATGCACTACTTCATCAAAGAGCAGTTCATCCCAAT 23470927 Query 18846 TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATAT 18905 | || ||||| | || | || || || || |||||||| | || | ||||| Sbjct 23470926 GAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTATCCTAACAAAAT-TGATA- 23470869 Query 18906 AATAGATACAAC-TCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATG 18964 | || | | | ||| ||| | ||| || ||| | | ||| ||||| | || | Sbjct 23470868 ATTACTTTAATCCTCT-TCTCCCATAGT---GTGTAGCAAGTATTTGAACATTGAGCAGG 23470813 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 ||||||||| || ||||| || || | |||| | |||||||| | ||||| Sbjct 23470812 CAAAATCAC-----------TCATCTCTGCTAATAAGTTCACTGGAAAATGTGAGACCAG 23470764 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATA--GAAGCAAATGATCCAGAAAAGAATAT 19082 ||||||| | || ||| || | |||||||||| || ||||| || ||||||| ||| || Sbjct 23470763 GCATCAGCCATCATTTCTTAAGCCAGAATATACTGATGCAAAAGAACCAGAAAGGAAGAT 23470704 Query 19083 ACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTC--CATAACTAGCATCATTATTATGA 19140 |||| || ||||| || || || | ||| || || ||| | |||| ||| Sbjct 23470703 TTCTTCCACATTAGCAAAGGCTACA--TCATGCTCTTCACAAATAGACTTTTTATCCTGA 23470646 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 |||| |||| | ||||| || ||||| ||||| | || | ||| Sbjct 23470645 TTCCA-----------AATCTGTTTTCTTCTTCACACAAGGCATCATTTCAGTGCCATTG 23470597 Query 19201 AATAGATACATACGCT--CATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 || |||| || | | | | | || |||| | || || || | |||||||||| Sbjct 23470596 AA--GATAAATTCTTTTTCTTTGGAATTTTTAG--TGTG-ATA-ATAAGGAAACTGTACA 23470543 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 || | ||||| || ||| |||| || || || ||||| || ||||| |||||||| | Sbjct 23470542 TTACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGCTTCTGTAA 23470483 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 | || | ||| | |||| | ||||| |||||| | ||| | ||||| ||| Sbjct 23470482 TTTGAATTTCTTGGCTAAATTGCTTCACCAATTTTTCACGTATTATGCTATCAC---CTG 23470426 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAAT 19438 | |||| || | |||||| ||||||| | | || || || || | | |||| | Sbjct 23470425 CTAAAA--GCCAGAACATGTGCTATAAAATCTCTCTCCTC-AAGCTTCAGGGCTTCCCAG 23470369 Query 19439 CATT-AATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 || ||| | | | | |||||| || | |||||||||||| |||||||| |||||| Sbjct 23470368 GGTTGAATGTTCCTGAAGAGATCTACCTCGTTAACTGTCCAAAAGGAAGCCTCAGCTTTT 23470309 Query 19498 TT 19499 || Sbjct 23470308 TT 23470307 >seq19 Length=38427206 Score = 129 bits (142), Expect = 7e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || |||| |||||| |||||||| | |||||||| || ||||| || ||| Sbjct 3916227 TCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCTTT 3916286 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 ||||||||||||| |||||| ||||| || ||||| || ||||| || || ||||| ||| Sbjct 3916287 AACCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCA 3916346 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 3916347 ACCACTCTTTCCCC 3916360 >seq7 Length=60492774 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| | Sbjct 54099246 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 54099305 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || || || || || ||||| | Sbjct 54099306 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 54099365 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 54099366 CTACAACACGTTCTCC 54099381 Score = 111 bits (122), Expect = 2e-19 Identities = 115/149 (77%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 |||||| ||| ||||||| | ||||||||| ||| || || | ||| |||||||| Sbjct 54097689 TTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTG--TTGGATTCGACATCACTCCCATC 54097746 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || |||| ||| ||| Sbjct 54097747 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTC 54097806 Query 18730 TCCATAAAATCAAATGGATTTTTTACATT 18758 |||||||| ||||||||||||| ||| || Sbjct 54097807 TCCATAAAGTCAAATGGATTTTCTACTTT 54097835 >seq12166 Length=2209 Score = 111 bits (122), Expect = 2e-19 Identities = 115/149 (77%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 |||||| ||| ||||||| | ||||||||| ||| || || | ||| |||||||| Sbjct 2056 TTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTG--TTGGATTCGACATCACTCCCATC 2113 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || || |||| ||| ||| Sbjct 2114 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTC 2173 Query 18730 TCCATAAAATCAAATGGATTTTTTACATT 18758 |||||||| ||||||||||||| ||| || Sbjct 2174 TCCATAAAGTCAAATGGATTTTCTACTTT 2202 >seq4 Length=67649338 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| ||||| || || || ||||| || || Sbjct 16418166 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATGGAC 16418107 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || ||||||||||| || |||||||| | |||| | ||| || Sbjct 16418106 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 16418047 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 16418046 TTTCTTACACCATA 16418033 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 16420953 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 16420894 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || ||||| || || |||||||| || |||||||| | | || | Sbjct 16420893 TCAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCTGCTGCCATTTTGAGAACAGTTT 16420834 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||||| ||| |||| ||| || || Sbjct 16420833 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTAAGGTCATCAGG 16420785 >seq87 Length=7156779 Score = 100 bits (110), Expect = 3e-16 Identities = 367/576 (64%), Gaps = 38/576 (7%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||||||| ||| | ||||||||||||| |||||| | ||| |||||||| Sbjct 717299 TTAGAAGTCAACATTCAAGGTAAAAGAATTCTCT--ATTAGATTGGACATCACTCCCATG 717356 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | |||| ||| | ||||| ||||||| ||| | || || || | ||| || Sbjct 717357 CTCTGATGCTCGCCTACTCT-----CAAAGAAGTTATTCTTCCCTTCCAGTGAATTATTC 717411 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| |||| | ||||| ||| | | | || | || | || || | | Sbjct 717412 TCCATAAAGTCAACTATATTTTCTACTCTGAAAACCTTGTGAAAGCTCAACTCCAGCATG 717471 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 || || || | || |||||||| || ||||||| | || ||||| || | | Sbjct 717472 AGCCTGTCTACCACGAATTTAATGTACTGCTTCATCAAAGTGCAGTTCATCCCAGTGAGC 717531 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAAT 18908 || |||| | || | || || || || |||||||| | || || | |||| || || Sbjct 717532 TTCACAGCCAAGGCCACCGTGAGGAACTCCTGTTCTATCCTCACAGCAT-TGATGATTAT 717590 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | | |||| | || || || || || ||||||||||| | || ||||| Sbjct 717591 TGCTTTTGCTCTCTGCTCTGATGGTTTGTGTAACAGGTGTTTAAACATTCAGCAGGCAAA 717650 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||| |||| |||| | ||| | || | |||||| |||||||| | Sbjct 717651 GCCACAGTGTAAACCCTTGATTCTGATAATAAGTTCATTGGAAAATGTGA---------- 717700 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 |||||||||| || |||| | ||||||||||| || ||||| Sbjct 717701 ----------------GACCAGAATATTGACACAAAAAAACCAGAAAAGAAGATTCCTTC 717744 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 | | | ||||| || | | |||| | || |||| || || | |||||| | Sbjct 717745 TGCAGTGGCAAAGGCTAAAACATGTTCT-CGTAGGTAGCCTCTTTGTCCCCAATCCAACT 717803 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCAT 19184 || |||||||| || ||| | || ||||| ||||| Sbjct 717804 CAAGGCCCAATCTGCTTTCCTCTTCACACAAGGCAT 717839 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| || | || || | | ||| ||||||| ||||| || |||||| | || Sbjct 718051 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTTAGAATGCATGTTTTCTGTGGC 718110 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 | || || || || ||||| | ||||||| || || ||||| | ||||| ||| Sbjct 718111 AACTTGGAAGCCATAGAAACAGCACACTTCTGTAATTTGAACTTCTTGGCTAAATCATTC 718170 Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 |||||||||||||| ||| |||||||| |||||||| || || Sbjct 718171 CACCAAATTTTCATTTGTTATGCCATCACTTGCTGCAAAGAAAGC 718215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562006615646520