Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq30 140 4e-28 seq5855 84.2 3e-11 seq180 84.2 3e-11 >seq30 Length=30016984 Score = 140 bits (154), Expect = 4e-28 Identities = 182/249 (73%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| ||| | || || | | ||||| |||||||||| |||| | | ||| ||||| Sbjct 28122527 ACTGAGTAACTTACAAGTTACCCATCACGCTCAACTGTCTGGGAATAGCACCTGTGAGAT 28122586 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| |||||||| ||| | ||| |||| ||||| | |||| ||| ||| || || Sbjct 28122587 CCACCTGACCTGCTCTCTGGAGAATCCAAATGATACTGTCTCATTCGGGTGGAAGCTCTC 28122646 Query 2327 GGGCAAGACGCT-TCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385 | || | ||| |||||| || || |||||||| | |||||||||||||| || || Sbjct 28122647 AGAAAACA-GCTCTCTACGAGAACCAAACCTCACTATCTCCTGGGACCCCATGAGTTCCA 28122705 Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445 |||| ||||||||||| ||||| || || ||| | || |||||| | || | | ||| Sbjct 28122706 GTGAACAGAACTACACCTGCATAGCTGAGAACCCGGTCAGCAATTTATCATCCTTAGTCA 28122765 Query 2446 CGGCCCAGA 2454 | ||||||| Sbjct 28122766 CTGCCCAGA 28122774 >seq5855 Length=3169 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 || || || ||||| || || | || ||||||| |||||||||||||| || || Sbjct 197 GGCAACCCCTCATGCTGCACATGGCACATGTATCTCTGCTCTTCTCCAGAAGATACCACC 256 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| ||||||| || || | ||||| || || || | || || | |||| | Sbjct 257 ACAGCTGCCCATTTCTGGAATTTTCCATCCCCTGCAGGCCTAGTCTCCACAAGCTCCATT 316 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 ||||| |||| || || || || || | ||| || | | || || || || || || Sbjct 317 TCTTGGGTTTGGTCCTCCCCATCCCGTTGCCAAGTCAGGGTGATCTCCGCAGGGTAGAAC 376 Query 14352 CCCAAAGCCCAGCACC 14367 |||| ||||||||||| Sbjct 377 CCCAGAGCCCAGCACC 392 >seq180 Length=636984 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 14172 GGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACG 14231 || || || ||||| || || | || ||||||| |||||||||||||| || || Sbjct 539177 GGCAACCCCTCATGCTGCACATGGCACATGTATCTCTGCTCTTCTCCAGAAGATACCACC 539118 Query 14232 ATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTA 14291 | |||| ||||||| || || | ||||| || || || | || || | |||| | Sbjct 539117 ACAGCTGCCCATTTCTGGAATTTTCCATCCCCTGCAGGCCTAGTCTCCACAAGCTCCATT 539058 Query 14292 TCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAA 14351 ||||| |||| || || || || || | ||| || | | || || || || || || Sbjct 539057 TCTTGGGTTTGGTCCTCCCCATCCCGTTGCCAAGTCAGGGTGATCTCCGCAGGGTAGAAC 538998 Query 14352 CCCAAAGCCCAGCACC 14367 |||| ||||||||||| Sbjct 538997 CCCAGAGCCCAGCACC 538982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629168804180280