Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq67 178 2e-39 seq161 161 1e-34 seq58 132 6e-26 seq19 107 2e-18 seq7 107 2e-18 seq87 102 1e-16 seq12166 86.0 7e-12 >seq67 Length=10555288 Score = 178 bits (196), Expect = 2e-39 Identities = 576/884 (65%), Gaps = 18/884 (2%) Strand=Plus/Minus Query 36888 TGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCC 36947 ||||| ||| |||| || | || || |||||||| || || |||| || || |||||| Sbjct 3668887 TGATACTCTGAAACTTGT-TCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCC 3668829 Query 36948 ATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCAGAAGC 37007 ||||||||||| ||||| || | | | | | || | |||| || | Sbjct 3668828 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCACAAGTAAT 3668769 Query 37008 CTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTT 37067 || || || |||||||| || || | | ||| | || |||| || | ||| || Sbjct 3668768 CTTTCAGCTACAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCA 3668709 Query 37068 ACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTA 37127 ||||| | | ||| | ||| | || ||| | ||||||| |||| || | Sbjct 3668708 ACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCAT---TAACAATGATC 3668652 Query 37128 ACAATAAC----TTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAA 37183 | | || |||||| | | || | ||| || | ||||| || || ||||| Sbjct 3668651 TCCCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAA 3668592 Query 37184 ATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCAT 37243 ||| | | | |||||||||| | |||| ||||| |||| || | ||| || || Sbjct 3668591 GTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGAT 3668532 Query 37244 TAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTC 37303 |||||| || || | ||| || || || ||||||||||| || |||||||| ||||| Sbjct 3668531 GGGACCTCTCTTCTTTAACCAGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTC 3668472 Query 37304 AACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAttt 37363 || || | || || | | | || ||||| || | ||| | |||||| Sbjct 3668471 CACAGCACTGATGGCCACCACTCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCATCA 3668412 Query 37364 ttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAA 37423 | ||| |||| ||| ||||| || ||||||| |||||| || || | ||| Sbjct 3668411 CAGGGCCCAGTCTGTTTTTTTCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAAAA 3668352 Query 37424 Gtttt-tttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGT 37482 || |||||| |||| | || |||||| ||||| ||||| || || | |||| Sbjct 3668351 TTTCCCTTTCTTGGG-ATCTCTGATTCTAGTATCTATTAGCAAACTGTATATCTTTGAGT 3668293 Query 37483 GAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACAT 37542 ||| ||| | || || ||||||||||| ||||| | ||| || || | ||| || | Sbjct 3668292 GAACATTCTTTATGAGAATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACCT 3668233 Query 37543 CGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAG 37602 | | | ||| |||| | || |||||||| | | |||||||| | |||||| ||| Sbjct 3668232 CCTGACTAAAGCTCTCCACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAA-AAAA 3668174 Query 37603 CAAG--AACATATTTTATAAAATGTCTTTCATCATTTGAT---AATTTTTTCCAATCATT 37657 ||| || |||| | | || | ||| |||| |||| | || ||| | | | Sbjct 3668173 AAAGCTAAGATATGAGAGAGAAAATAATTC-TCATCTGATTTAAGCTTGTTCTAGTGAAG 3668115 Query 37658 AATATCTTTTGATAAA-TCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTAT 37716 | ||| ||||||||| ||||| || || | ||||| || |||| ||| ||| || Sbjct 3668114 GAGATCCTTTGATAAAGTCAACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTCAT 3668055 Query 37717 ACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAAT 37760 |||| |||||||||| | || ||||||||||| |||||| Sbjct 3668054 ACATTTTCCAAATATCGGGGTACTGAATTGGAAATATGACAAAT 3668011 >seq161 Length=830332 Score = 161 bits (178), Expect = 1e-34 Identities = 498/769 (65%), Gaps = 35/769 (5%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| | || |||| |||| || || || || ||||| |||| Sbjct 529813 CATCACTCCCATCCTCTGATACTTGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 529871 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATG 36990 ||||||| ||||| |||||||| ||||||||||| | || | | | || | Sbjct 529872 CTAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTTTGAAAACCTTGTTAAAGC 529931 Query 36991 ATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCATA 37048 | ||| || ||||||||| || ||||| || ||||| | ||| | || || Sbjct 529932 CCAGCTCCAGCATAAGCCTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAA- 529990 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || |||||||| || | || | || ||| || || | ||||||| | || Sbjct 529991 -TTCATCCCAATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGAC 530049 Query 37109 AGCATCTTTAACTATATTAACAATAACT-TCT--TCAGTTGGGGGATATTTTAAATATTT 37165 ||||| ||| | | | | | ||| ||| || | ||| | | | ||| Sbjct 530050 AGCATTGATAATTGTTT---CTTTTACTCTCTGCTCTGATGGTTTGTGCAGCAGGTGTTT 530106 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 |||| | || ||||| ||||| ||||| || |||||| | || || | |||||| || Sbjct 530107 GAACATCAGGCAGGCAAAGTCACAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGA 530166 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 ||| || | || ||||| | |||| ||| || | | Sbjct 530167 AAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGC----------------------- 530203 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT 37345 ||||||||| || || || || || ||||| ||||||| |||| || | || | Sbjct 530204 AGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTC 530263 Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC 37405 | || |||| | | |||||| || || || ||||| |||||| | Sbjct 530264 TTTGTCCCCAATCAAACGCAAGGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTAC 530323 Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 ||| || || |||||||| | |||||| ||| | || ||||| ||||| || | Sbjct 530324 AATGGCATTGAAGAGAAATTCCCTTTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAG 530383 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 ||||||||||||||| || || ||||| || || || || || ||||| |||| | || Sbjct 530384 ACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGC 530443 Query 37526 TTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 ||| | | |||||| || | ||| | || | || || ||||| ||||| ||||| Sbjct 530444 TTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATC 530503 Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||| || ||| ||||||| |||| | |||||||| || ||| ||| Sbjct 530504 ACTTGCCGCAGAGAAAGCCAGAAAGTGGGATATAAAATATCATTCCTCA 530552 >seq58 Length=13050397 Score = 132 bits (146), Expect = 6e-26 Identities = 294/439 (67%), Gaps = 8/439 (2%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||| | |||||| ||||||| |||||||| || || | |||| | Sbjct 9036050 TTTGAACATCAGGCAGGCAGAGTCACAAAGTAAACCCTCATCTCTGCTAATAAGTTCACT 9036109 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 |||| ||| || ||||| || || | ||| || | | | ||||||| | ||||||| Sbjct 9036110 GGAAAC--TTAGGCCAGGCATCAATCCCCATTTCTTGAACTAGAATATTGATTCAAAAGA 9036167 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 || | ||||| | ||||| || || ||||| ||||||| || | | | | || | Sbjct 9036168 AACATAGAAGAAGTTTCCTTCCACAGCGGCAAAGGCTACAACACATTCTCTGTAGGTAGC 9036227 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || |||||| | | ||| | | || || ||| | ||||| Sbjct 9036228 TTCTTTGTCCCCAATCCAATGCAAGACCTAATTTACTTTCTTCTTTACATAAGGTATTGT 9036287 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 |||||| || || |||||||| | |||||| |||| | |||| ||||| || Sbjct 9036288 TTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGAAATCTTT-----AAGTGTCAATAAG 9036342 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | ||||||||||||| | || | ||||| || || || || || |||| ||||| Sbjct 9036343 GAGACTATACATTTCACAATGTAG-TTTTCCATGGCAATTTGGAAGTCATAGAAACAGTG 9036401 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 | |||| | | |||||| || | || | || | || |||||||| | ||| || Sbjct 9036402 AACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTATTATGCC 9036461 Query 37583 ATCACTAGCTGCAAAGAAA 37601 |||||| |||||||||||| Sbjct 9036462 ATCACTTGCTGCAAAGAAA 9036480 >seq19 Length=38427206 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || |||| |||||| ||||| || | || ||||| | |||||| || | Sbjct 3916225 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 3916284 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 3916285 TTAACCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 3916344 Query 37318 CTAC 37321 | || Sbjct 3916345 CAAC 3916348 >seq7 Length=60492774 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 54099248 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 54099307 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| ||||||||| ||||||||||| || || || || || ||||| ||| Sbjct 54099308 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCT 54099367 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 54099368 ACAACACGT 54099376 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| |||| Sbjct 54097734 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 54097792 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||||| ||||| |||||||| ||||||||||| Sbjct 54097793 CTAGTGAAATATTCTCCATAAAGTCAAATGGATT 54097826 >seq87 Length=7156779 Score = 102 bits (112), Expect = 1e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| | || ||||| ||||| || | ||||||||||| ||| || || ||||| | || Sbjct 718051 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTTAGAATGCATGTTTTCTGTGGC 718110 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558 | || || ||||| ||||| | |||| | | |||||| || | ||| | | Sbjct 718111 AACTTGGAAGCCATAGAAACAGCACACTTCTGTAATTTGAACTTCTTGGCTAAATCATTC 718170 Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618 | || |||||||| ||| |||||||| |||||||||||||| |||||| ||| Sbjct 718171 CACCAAATTTTCATTTGTTATGCCATCACTTGCTGCAAAGAAAGCCAGAACAAGCAATAT 718230 Query 37619 AAAATGTCTTTCATCA 37634 ||||| || ||| ||| Sbjct 718231 AAAATATCGTTCCTCA 718246 >seq12166 Length=2209 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| |||| Sbjct 2101 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 2159 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||||| ||||| |||||||| ||||||||||| Sbjct 2160 CTAGTGAAATATTCTCCATAAAGTCAAATGGATT 2193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592209124209720