Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq138 118 8e-22 seq25 116 3e-21 seq30 100 2e-16 seq17 95.1 1e-14 seq1035 91.5 1e-13 seq9 87.8 1e-12 >seq138 Length=1287892 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || ||||||||||| | | ||| | | |||| ||||| ||| Sbjct 343424 TGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTACGGCCATCTTCCAACTGC 343483 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || ||||||||||||||||| || || || Sbjct 343484 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGGATCTTG 343543 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| || || |||| || ||||| || Sbjct 343544 GCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 343603 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 343604 AGGGTCTTCACAAAGATCTGCAT 343626 >seq25 Length=31340621 Score = 116 bits (128), Expect = 3e-21 Identities = 149/204 (73%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || || || || || ||||| || | | ||| | |||| |||| ||| Sbjct 4762707 ATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTG 4762766 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| |||| | || ||||| || ||||| | ||| ||||| || || || Sbjct 4762767 CTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTC-TTCCTTATCCTGGATCTT 4762825 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||||| |||||| |||||| || | ||| || || || || || || || || Sbjct 4762826 GGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTATTAGTCTTCCCTGT 4762885 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||||||||| |||||||| Sbjct 4762886 AAGGGTTTTTACAAAAATCTGCAT 4762909 >seq30 Length=30016984 Score = 100 bits (110), Expect = 2e-16 Identities = 143/200 (72%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 101270 AGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTA 101329 || || |||||||| || || |||||||| | || ||| | | |||| |||| || ||| Sbjct 13544494 AGAGTGGATTCTTTCTGGATGTTGTAATCTGGGAGAGTGCGGCCATCCTCCAGCTGTTTA 13544435 Query 101330 CCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 101389 ||||||||||||| | |||| | ||| || | ||||| || | ||||||| ||| | Sbjct 13544434 CCTGCAAATATCAGATGCTGCT-ATCAGGTGAGATGCCCTCCATGTCTTGAAATTTCGCT 13544376 Query 101390 TTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAA 101449 || ||| | || | |||||| | || || | || |||| || ||||| || | Sbjct 13544375 TTGACATTCTCGATGGTGTCACTGGGCTCGACCTTGAGGGTGATGGTCTTGCCTGTCAGG 13544316 Query 101450 GTTTTTACAAATATCTGCAT 101469 || || ||||| |||||||| Sbjct 13544315 GTCTTCACAAAGATCTGCAT 13544296 >seq17 Length=43943611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | || ||||| || ||||| || || ||||| || | Sbjct 21311322 CCACCCCTCAGACGAAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 21311381 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| |||| |||| ||||||||||| | | ||| || || || ||| Sbjct 21311382 AGAGTGCGGCCATCTTCCAGCTGCTCCCCTGCAAATATGAGTCTCTGCTGGTCAGGGGGA 21311441 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||| |||| || || || || ||| | || | ||||| | ||||| Sbjct 21311442 ATGCCTTCTGTATCCTGGATCTTGGCCTTCACATTCTCAATGATGTCATTGGGCTCCACC 21311501 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||| || ||||| || | ||||| ||||| || ||||| Sbjct 21311502 TCCAGGGTGGTGGTCTTGCCAGTCAGGGTTTTCACAAAGATGTGCAT 21311548 >seq1035 Length=9571 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 101306 GTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATG 101365 ||||| | || |||||||||||||| ||||| ||||| | ||||| || || || || Sbjct 1 GTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATA 60 Query 101366 CCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCA 101425 ||||| || ||||| || || || ||| | || | |||||||| | ||| ||||| Sbjct 61 CCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCC 120 Query 101426 AGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | ||||| || || || || ||||| || || || Sbjct 121 AAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 155 >seq9 Length=54061371 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || ||||| || | | ||| | | |||| |||| || Sbjct 30845427 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCAGC 30845368 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || ||||||||||||||||| || || || Sbjct 30845367 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTA 30845308 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| |||| || || |||| || ||||| || Sbjct 30845307 GCCTTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAGGGTGATAGTCTTGCCAGTC 30845248 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || | ||| |||||||| Sbjct 30845247 AGGGTCTTCATAAAGATCTGCAT 30845225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396208162501851