Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq138 96.9 3e-15 seq25 95.1 9e-15 >seq138 Length=1287892 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || || ||| |||||| || |||||||||||||| Sbjct 343399 GCCACCCCTCAGACGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGA 343458 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || ||||||||||| || ||||| || || | ||| || || | ||| Sbjct 343459 AAGAGTACGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 343518 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| || || || ||||| || ||| | | | || | |||||| Sbjct 343519 AATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 343578 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| || || ||||| |||||||| Sbjct 343579 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 343626 >seq25 Length=31340621 Score = 95.1 bits (104), Expect = 9e-15 Identities = 153/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| || ||| | ||| || ||| ||| || ||||| ||||| ||||| | | | || Sbjct 4762693 AGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGT 4762752 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||||| ||||| ||||||| || ||||| | |||| | ||| Sbjct 4762753 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCT-TCC 4762811 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| ||||||| | | || || || | || ||||| | ||| Sbjct 4762812 TTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTA 4762871 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 | || || || || | ||||||||||||||||||||| Sbjct 4762872 TTAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCATC 4762910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380870081548389