Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 6e-15 seq169 89.7 1e-12 seq16 84.2 4e-11 >seq4 Length=67649338 Score = 96.9 bits (106), Expect = 6e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| || || ||||||||||||||||| |||||| ||||||||||| ||| Sbjct 16408272 GTATACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGG 16408213 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| || |||||| |||||||||||||| |||| || |||||| ||| Sbjct 16408212 TTGCTCTTCCGATTACAAGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTGA 16408153 Query 213648 GAC 213650 ||| Sbjct 16408152 GAC 16408150 >seq169 Length=720790 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 |||||| |||||| ||||||||||| | || |||| | ||||| || || |||| | Sbjct 527915 CTTGAGTGTCTTCACATTCTCCTCCAGGCACGAGATGAGCTCCAGATTATGCTTGCGGTA 527974 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| |||||| | || ||| | || | ||| | |||||||||||||||||||| Sbjct 527975 CTTGGAGGCTGCGATGCTGTTGAGCAGCCGCTTGGGCTCCGCCTTGATGCGTTCCTGCAT 528034 Query 241609 CTCCATGTCGAT 241620 ||||||| ||| Sbjct 528035 GTCCATGTGGAT 528046 >seq16 Length=44863414 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| |||||||||| ||||| | ||||| || | ||||| || | ||| Sbjct 7731498 TTCACTTTTTCCTCCAGCCTGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTCGAGGCG 7731439 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||| ||| Sbjct 7731438 GCAATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATACGCTCCTGGGACTCCATATCG 7731379 Query 241619 ATCGGAGAC 241627 || |||||| Sbjct 7731378 ATGGGAGAC 7731370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931363458981120