Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 3e-12 seq19 84.2 4e-11 >seq7 Length=60492774 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 ||||||||||||||||||||||| ||||| || ||||| ||||| | || |||||| Sbjct 54099369 GTAGCCTTTGCTGCTGTGGAGGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGG 54099310 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| || || |||||||| || || || ||||| || Sbjct 54099309 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 54099251 Query 26004 CGAGG 26008 |||| Sbjct 54099250 TGAGG 54099246 >seq19 Length=38427206 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||||||||| || || || ||| || || ||||| || || |||| Sbjct 3916350 TGGTTGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCTATATTCT 3916291 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 || | ||| ||| || |||||| ||||| |||||||| || || |||||||| | Sbjct 3916290 GGTTAAAGAAGAGAGGTCTCATGCCTGGGCTCACATTTTCCAATGAACTGATCAGCAGAG 3916231 Query 26003 ACGA 26006 | || Sbjct 3916230 ATGA 3916227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928675947625920