Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq33 286 4e-72 seq5 156 5e-33 seq3 113 5e-20 >seq33 Length=24047555 Score = 286 bits (316), Expect = 4e-72 Identities = 613/908 (68%), Gaps = 25/908 (3%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| || || || || | || ||||| ||| || ||||| || Sbjct 18067988 CAGATGCTCATCCAAACACTGAACAGCAAAGAGATCGACGTCCAGGTCAAACTTATTGGC 18067929 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || | ||||| || |||| ||||||| || ||| || | ||||| || || || Sbjct 18067928 AAAAAAGTGGTGC---TTACGTAGTATCCAGTTCAAGTCGCCAGCTCCGAAAACACACAC 18067872 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | || || ||| |||| || ||||| | || || | || ||||||||||| Sbjct 18067871 TGAGCGCACATGGACCCCGCTGCAGGGTGGGTAAGGTGCACCCTGGGCAACGTCACCTTC 18067812 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| ||||||||||| | | ||||||||| || ||| || |||| Sbjct 18067811 AAAGTACTGCCACTTGACAAACCTGGCAACTGACTGCATGTCAGACAAGTCATACTTGTG 18067752 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | || || || || | || || | ||| | |||||||| || | || Sbjct 18067751 GCTTAAGGACAGGGAGCCTGGGACCTCAGGGATCCTCTGAATAGTGGCCCAGAGATACTC 18067692 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT-TAACCTGTCCCGCA 160410 || |||||||||||||| | | ||| |||||||||| | || | | || | | Sbjct 18067691 ATCTGGGCTGTACGTGTCTTGTGCCCACTCCATGAACTTTTGAATGTTTTCATTCTCT-A 18067633 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | || | | ||||| || | || ||||| || || ||||| || || | ||| Sbjct 18067632 GCACATACCTCACGTACTCCCTACTGACCACAAAATAGGCACTGCCCGAAAACAGAGGTG 18067573 Query 160471 T---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCA 160527 | | || ||| || ||||| | || || |||| || | ||| || | | Sbjct 18067572 TTTTGAGTGGAGGATGCA---CTTTGACAGTCCCCGTATTAGTCAACTTTCCGTTAATGA 18067516 Query 160528 GCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGAC 160587 | | || ||||||||||||| | || | | |||||| |||||| || || Sbjct 18067515 CCACATGATGCTTCTTCCACCTTTCTTCTTTATTAGATGGCATCTTTTCCGTTTCCAGGT 18067456 Query 160588 TGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAA 160647 |||| |||| || || || |||| | |||| || || ||||| || || |||| Sbjct 18067455 TGTTTTCACCCATGAATGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAGTAGGAA 18067396 Query 160648 AGTCGGTACCGCACAAG--TTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTC 160705 | || || | ||||| || |||| ||||||||| || || |||| || ||||| Sbjct 18067395 AATC--TAACCCACAAAGATTGATCAAGTACTTCCAATTGGCACTCATTCTGTAGAGGTC 18067338 Query 160706 CCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAG 160765 | ||||||| || | ||| ||||| || || |||||||| || || ||||| ||||| | Sbjct 18067337 CTTCATGCAGTTGAGATCGGCCTGAACCCGACTCCAGGATGCATAAACTACATTCTCCAA 18067278 Query 160766 TTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCC---ACCACCGCCAGAAA 160822 | ||||||||||||||||||| |||||| || |||| ||| ||| | || | ||| Sbjct 18067277 CTGACTGGCCACAAAGACGTTACTGAAACAGGATGCGATGCCCATTACCGCTGCTATAAA 18067218 Query 160823 GAA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAG 160880 | | | ||| || ||| ||| || || | ||| || | ||||||||| ||| Sbjct 18067217 GGAGTCCTCTGAT-----TTTTTGTCTACATGAATGCAGTAGAAATTCTGAGGCATATAG 18067163 Query 160881 ATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCT 160940 |||||||| || | ||| || | ||| || || || ||||| | ||| || || || || Sbjct 18067162 ATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATGGAATATGCA 18067103 Query 160941 ATCGGAAA 160948 || || || Sbjct 18067102 ATTGGGAA 18067095 >seq5 Length=64221397 Score = 156 bits (172), Expect = 5e-33 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||||| || || | || ||||||||||| ||| Sbjct 7194066 TAGAGGGTGAGGCAGGCTGTTCCCGAGATCTTCCCAGAACTAAAGGTGTTGAAGAGACAC 7194125 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| |||| || |||||||||| || || ||||| || || | |||||||| |||| Sbjct 7194126 ATGTAGCACCCCTCGTCCTCCAGCGTTGTGTTCCAGAAGGTGATGGTTGAGTTCTGGAGT 7194185 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || |||||||| | | | || | || || || ||||| || |||||| Sbjct 7194186 CCCAGCTCGGTGATGTTCACTCTGCCCTGGTAGGCGGGCTGGACCACAACCCCATGGTTC 7194245 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 |||| |||| ||||||| || ||||| |||||| | |||||||| || || ||| Sbjct 7194246 CTGCTGTAGGTAACCATGTTTTCTGGGCTTACAGCCTTTTTTTTCTGCCATGTCACAATC 7194305 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAG 168445 | | || | | | ||||| |||||||| | || || || ||||||||||| Sbjct 7194306 AAGGCTTCCTGGGCAGATTGCAGAGAACATCTTAAGGATGCAGGTGTGTTCAGCAG 7194361 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/208 (70%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 167895 TCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTC 167954 || || ||||| ||| | || || | ||| || ||||| || || |||||||| Sbjct 7191675 TCAGTCACAGTCCCCTGGTACAGCACTTGGCAGATTACCTCC---TTCCCCACTTGACTT 7191731 Query 167955 TTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACG 168014 || || ||||| || | | ||||| || ||| ||| || || || | ||||| | Sbjct 7191732 TTGGGGTCTTTGACACGGAGTATGCTGGTGACAGATGTGGTCCCGTTAGGGTGTAACAGA 7191791 Query 168015 GTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGT 168074 | | || || |||||||||||||| || || ||||||||| | || | || || || Sbjct 7191792 CTCTCGGTACTATTCTCAATCCCTGACCCAGCAACCTTCCAGGAGATCATGGGTGCTGGG 7191851 Query 168075 CGTGCTGTAGCAGAGCAGGTAATATTTA 168102 || || || |||||||| || ||||||| Sbjct 7191852 CGGGCAGTGGCAGAGCAAGTGATATTTA 7191879 >seq3 Length=68631033 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 176231 TAGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGG 176290 |||||| || |||| |||| || |||| |||||| | ||||| || || | | || Sbjct 16777641 TAGATACTTGGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAACGAATCTGC 16777582 Query 176291 TGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGC 176350 |||||| || || ||||| |||| || || ||||| | ||| | ||||| | | || Sbjct 16777581 TGGAATATAATTCTCATAGTTTTCCCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGC 16777522 Query 176351 TAATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGC 176410 || || | ||||| |||||||| |||||| || |||| |||||||||||||||| Sbjct 16777521 CAAAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGA 16777462 Query 176411 TAAATAGAACTTACATG 176427 | ||| || ||||||| Sbjct 16777461 GAGATAAAATTTACATG 16777445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577114268764680