Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq25 113 8e-20 seq91 104 4e-17 seq2 102 1e-16 seq138 95.1 2e-14 seq16 93.3 8e-14 >seq25 Length=31340621 Score = 113 bits (124), Expect = 8e-20 Identities = 153/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||| | || | ||| || ||| || ||||| || || || | ||| Sbjct 4762699 AGCACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCT 4762758 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | ||| || || ||||| || | ||| || ||||||||||| |||| ||| ||||| Sbjct 4762759 TCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTC-TTCCTTATCC 4762817 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| ||||| |||| ||||| || || | ||||| || || || |||| Sbjct 4762818 TGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTATTAGTC 4762877 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || ||||||||||| || ||||| Sbjct 4762878 TTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 4762909 >seq91 Length=6382753 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || || ||||| | || | ||| || |||| | ||||| || || || | ||| Sbjct 364191 AGAACAAGATGAAGGGTGGACTCCTTCTAAATGTCGTAGTCAGACAAGGTACGTCCATCT 364250 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 |||| ||| || || ||||| || | || | ||||||||||| |||||||| |||| Sbjct 364251 TCTAGTTGCTTACCAGCAAAGATGAGACTTTACTGATCAGGAGGAATTCCTTCCTTATTC 364310 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| ||||| |||| ||||| | ||| | ||||| || ||||| ||||| Sbjct 364311 TGGATCTTGGCTTTTACATTTTCTATAGTGTTGGAGGGTTCAACCTCGAGAGTAATAGTC 364370 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || ||||||| || || ||||| Sbjct 364371 TTCCCCATAAGGGTTTTTAAGAAAATCTGCAT 364402 >seq2 Length=69027483 Score = 102 bits (112), Expect = 1e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || ||| |||| | || | ||| || ||| || ||||| || | || | ||| Sbjct 23646313 AGCACCTGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACACGGTACGTCCATCT 23646254 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | ||| || | ||||| || | ||| || ||||||||||| |||||||| ||||| Sbjct 23646253 TCCAGTTGCTTATCAGCAAACATCAGTCTTTGATGATCAGGAGGAATTCCTTCCTTATCC 23646194 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || || |||| |||| |||| |||||||| || | ||||| || | || ||||| Sbjct 23646193 TGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACCTCCATTGTAATAGTC 23646134 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCA 193359 || |||| || |||||||| || || |||| Sbjct 23646133 TTCTCTGTAAGGGTTTTTACGAAAATCTGCA 23646103 >seq138 Length=1287892 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| |||| ||||| ||||| |||| || | |||||| ||||| || || || Sbjct 343400 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAA 343459 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | ||| || || || || || ||||| || | ||||| || ||||| || Sbjct 343460 AGAGTACGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 343519 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||||||||| || || |||| || | ||| ||| || || | ||| || Sbjct 343520 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 343579 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || || || || || ||||| || |||||||| Sbjct 343580 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 343629 >seq16 Length=44863414 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| || | ||| || ||||||||||| |||||||| || Sbjct 42573785 ATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 42573844 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| ||||| |||| ||||| || || | ||| | || || | | Sbjct 42573845 ATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCCAGCATAAC 42573904 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || | || || |||||||| || || ||||| Sbjct 42573905 AGTCTTCCTCGTAAGGGTTTTTACGAAAATCTGCAT 42573940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899490854075760