Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq161 93.3 6e-14 seq1035 86.0 9e-12 >seq161 Length=830332 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/161 (74%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 |||||||||| ||||| || |||||||| || | | | ||||||||||||||||||| Sbjct 530347 TTTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGT 530406 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA--TC-TCGC 18527 ||||||| || || || || | ||| || | || || | | ||||| || | || Sbjct 530407 TTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTTCTTGGC 530466 Query 18528 TATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 | ||||| || |||||||||||||| ||||| || ||| Sbjct 530467 T---AAATCGCTCCACCAAATTCTCATTTACTATGCCATCA 530504 >seq1035 Length=9571 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155836 TTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAA 155895 |||| || |||||||| || || || || || ||||| ||| |||||| | ||| | Sbjct 151 TTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGACA 92 Query 155896 ACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTT 155955 | || || || || ||||| || ||||| || || || || |||||||||||||| | Sbjct 91 ATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCT 32 Query 155956 ATGCCGGTAAGCAGCTCGAAGA 155977 ||| |||||||| | ||||| Sbjct 31 TTGCTGGTAAGCAATTGGAAGA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731738954818800