Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11-
20] 14,543 sequences; 2,510,587,379 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq25 113 9e-20
seq1035 107 4e-18
seq91 96.9 7e-15
seq16 96.9 7e-15
seq138 95.1 2e-14
seq1 86.0 1e-11
>seq25
Length=31340621
Score = 113 bits (124), Expect = 9e-20
Identities = 135/182 (74%), Gaps = 1/182 (1%)
Strand=Plus/Plus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || || ||||| || || ||| |||| |||| ||| |||||||||||||| | |||
Sbjct 4762729 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTT 4762788
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| |||||||| || ||| |||| ||||| || || || ||||||||| |||||
Sbjct 4762789 TGCTGATCAGGAGGAATT-CTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTG 4762847
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || | ||| || || || ||| | || || || || | ||||| | ||| ||||||
Sbjct 4762848 TCCGAGGGTTCAACCTCGAGTGTATTAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGC 4762907
Query 192535 AT 192536
||
Sbjct 4762908 AT 4762909
>seq1035
Length=9571
Score = 107 bits (118), Expect = 4e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441
|| |||||||| |||||||||||||| ||||| ||||| |||||||| || ||||| ||
Sbjct 10 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTG 69
Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501
||||| || || || ||||| || | || || ||||| ||||| | ||| |||
Sbjct 70 TCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCCAAAGTGATG 129
Query 192502 GTTTTACCAGTTAATGTTTTAA 192523
|| |||||||| || || ||||
Sbjct 130 GTCTTACCAGTCAAAGTCTTAA 151
>seq91
Length=6382753
Score = 96.9 bits (106), Expect = 7e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420
|| ||||| || || ||| |||| || | ||| |||||||||||||| | || | |||
Sbjct 364227 TAGTCAGACAAGGTACGTCCATCTTCTAGTTGCTTACCAGCAAAGATGAGACTTTACTGA 364286
Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480
||||| || |||||||| |||| || || || ||||||||| ||||| | ||
Sbjct 364287 TCAGGAGGAATTCCTTCCTTATTCTGGATCTTGGCTTTTACATTTTCTATAGTGTTGGAG 364346
Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| ||| || || |||||||| || || || | | ||||| | || ||||||||
Sbjct 364347 GGTTCAACCTCGAGAGTAATAGTCTTCCCCATAAGGGTTTTTAAGAAAATCTGCAT 364402
>seq16
Length=44863414
Score = 96.9 bits (106), Expect = 7e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423
||||| || || | | |||| |||| ||| |||||||||||||| | ||| || ||||||
Sbjct 42573768 TCAGACAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCA 42573827
Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483
|| || |||||||| ||||| || || || ||||||||| ||||| || || | |
Sbjct 42573828 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGT 42573887
Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| | || || ||| || || | || | ||||| | || ||||||||
Sbjct 42573888 TCAGCCTCCAGCATAACAGTCTTCCTCGTAAGGGTTTTTACGAAAATCTGCAT 42573940
>seq138
Length=1287892
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369
||||| || ||||| | || | || | || | |||||| |||||| ||||||||
Sbjct 343400 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAA 343459
Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429
| || || |||| ||||| || || || |||||||| | ||||| || ||||| ||
Sbjct 343460 AGAGTACGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 343519
Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489
|| ||||||||||| || || || || ||||| || | || | || ||
Sbjct 343520 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 343579
Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || || ||||| || ||||| | || || | ||| |||||||||||
Sbjct 343580 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 343629
>seq1
Length=90267253
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Minus
Query 192377 GTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTT 192436
|| |||| |||| ||| |||||||||||||| | |||||| |||||||| || | |||||
Sbjct 20659495 GTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG-AATCCTT 20659437
Query 192437 CTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAG 192496
| ||||| || || || |||||||| ||||| || || | ||| || || || |
Sbjct 20659436 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTCCGA-GGTTCAACCTCGAGCG 20659378
Query 192497 TAATGGTTTTACCA 192510
|||| || || |||
Sbjct 20659377 TAATAGTCTTCCCA 20659364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984296559688050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |