Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq25 113 9e-20 seq1035 107 4e-18 seq91 96.9 7e-15 seq16 96.9 7e-15 seq138 95.1 2e-14 seq1 86.0 1e-11 >seq25 Length=31340621 Score = 113 bits (124), Expect = 9e-20 Identities = 135/182 (74%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| || || ||| |||| |||| ||| |||||||||||||| | ||| Sbjct 4762729 ATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTT 4762788 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || |||||||| || ||| |||| ||||| || || || ||||||||| ||||| Sbjct 4762789 TGCTGATCAGGAGGAATT-CTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTG 4762847 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| || || || ||| | || || || || | ||||| | ||| |||||| Sbjct 4762848 TCCGAGGGTTCAACCTCGAGTGTATTAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGC 4762907 Query 192535 AT 192536 || Sbjct 4762908 AT 4762909 >seq1035 Length=9571 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || |||||||| |||||||||||||| ||||| ||||| |||||||| || ||||| || Sbjct 10 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTG 69 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 ||||| || || || ||||| || | || || ||||| ||||| | ||| ||| Sbjct 70 TCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCCAAAGTGATG 129 Query 192502 GTTTTACCAGTTAATGTTTTAA 192523 || |||||||| || || |||| Sbjct 130 GTCTTACCAGTCAAAGTCTTAA 151 >seq91 Length=6382753 Score = 96.9 bits (106), Expect = 7e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420 || ||||| || || ||| |||| || | ||| |||||||||||||| | || | ||| Sbjct 364227 TAGTCAGACAAGGTACGTCCATCTTCTAGTTGCTTACCAGCAAAGATGAGACTTTACTGA 364286 Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 ||||| || |||||||| |||| || || || ||||||||| ||||| | || Sbjct 364287 TCAGGAGGAATTCCTTCCTTATTCTGGATCTTGGCTTTTACATTTTCTATAGTGTTGGAG 364346 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||| || || |||||||| || || || | | ||||| | || |||||||| Sbjct 364347 GGTTCAACCTCGAGAGTAATAGTCTTCCCCATAAGGGTTTTTAAGAAAATCTGCAT 364402 >seq16 Length=44863414 Score = 96.9 bits (106), Expect = 7e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| || || | | |||| |||| ||| |||||||||||||| | ||| || |||||| Sbjct 42573768 TCAGACAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCA 42573827 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || || || ||||||||| ||||| || || | | Sbjct 42573828 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGT 42573887 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || || ||| || || | || | ||||| | || |||||||| Sbjct 42573888 TCAGCCTCCAGCATAACAGTCTTCCTCGTAAGGGTTTTTACGAAAATCTGCAT 42573940 >seq138 Length=1287892 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || ||||| | || | || | || | |||||| |||||| |||||||| Sbjct 343400 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAA 343459 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| ||||| || || || |||||||| | ||||| || ||||| || Sbjct 343460 AGAGTACGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 343519 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||||||||| || || || || ||||| || | || | || || Sbjct 343520 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 343579 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| || ||||| | || || | ||| ||||||||||| Sbjct 343580 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 343629 >seq1 Length=90267253 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 192377 GTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTT 192436 || |||| |||| ||| |||||||||||||| | |||||| |||||||| || | ||||| Sbjct 20659495 GTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG-AATCCTT 20659437 Query 192437 CTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAG 192496 | ||||| || || || |||||||| ||||| || || | ||| || || || | Sbjct 20659436 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTCCGA-GGTTCAACCTCGAGCG 20659378 Query 192497 TAATGGTTTTACCA 192510 |||| || || ||| Sbjct 20659377 TAATAGTCTTCCCA 20659364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984296559688050