Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1035 118 2e-21 seq25 96.9 6e-15 seq16 87.8 3e-12 seq91 86.0 1e-11 seq7 84.2 4e-11 >seq1035 Length=9571 Score = 118 bits (130), Expect = 2e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972 |||| |||||||| ||||||||||| || ||||| |||||||||||||| || ||||| | Sbjct 8 CGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCT 67 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 | ||||| || || || ||||| || || || || ||||| ||||| | ||| | Sbjct 68 TGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCCAAAGTGA 127 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAA 172060 |||| |||||||| || || |||| ||| Sbjct 128 TGGTCTTACCAGTCAAAGTCTTAACGAA 155 >seq25 Length=31340621 Score = 96.9 bits (106), Expect = 6e-15 Identities = 132/183 (72%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || || |||| ||| | || |||| ||| ||||||||||| || | ||| Sbjct 4762728 AATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCT 4762787 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || || ||||| || ||| |||| ||||| || || || ||||||||| |||||| Sbjct 4762788 TTGCTGATCAGGAGGAATT-CTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGT 4762846 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | ||| || || || ||| | || || || || | ||||| | || ||||| Sbjct 4762847 GTCCGAGGGTTCAACCTCGAGTGTATTAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTG 4762906 Query 172067 CAT 172069 ||| Sbjct 4762907 CAT 4762909 >seq16 Length=44863414 Score = 87.8 bits (96), Expect = 3e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || |||| | | | || |||| ||| ||||||||||| || | ||| || || ||| Sbjct 42573768 TCAGACAAAGTACATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCA 42573827 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || |||||||| ||||| || || || ||||||||| |||||| || || | | Sbjct 42573828 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGT 42573887 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | || || ||| || || | || | ||||| | ||| |||||||| Sbjct 42573888 TCAGCCTCCAGCATAACAGTCTTCCTCGTAAGGGTTTTTACGAAAATCTGCAT 42573940 >seq91 Length=6382753 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 171878 CTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAA 171937 ||| || |||| | || || || || | ||| | || || | ||| ||||||||||| Sbjct 364211 CTCCTTCTAAATGTCGTAGTCAGACAAGGTACGTCCATCTTCTAGTTGCTTACCAGCAAA 364270 Query 171938 AATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 171997 || | || | || ||||| || |||||||| |||| || || || ||||||||| Sbjct 364271 GATGAGACTTTACTGATCAGGAGGAATTCCTTCCTTATTCTGGATCTTGGCTTTTACATT 364330 Query 171998 AGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 172057 |||||| | || | ||| || || |||||||| || || || | | ||||| | Sbjct 364331 TTCTATAGTGTTGGAGGGTTCAACCTCGAGAGTAATAGTCTTCCCCATAAGGGTTTTTAA 364390 Query 172058 GAATATCTGCAT 172069 ||| |||||||| Sbjct 364391 GAAAATCTGCAT 364402 >seq7 Length=60492774 Score = 84.2 bits (92), Expect = 4e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 39162 ATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATT 39221 |||| |||||| ||| || | || ||||| | ||||| || || ||||| |||||| Sbjct 54099260 ATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATT 54099319 Query 39222 GATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTA 39270 ||||||||| || ||||||||| || ||||||||| ||||| |||| Sbjct 54099320 GATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCTA 54099368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904971457589400