Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq83 159 2e-34 seq138 102 5e-17 seq25 102 5e-17 seq9 93.3 3e-14 seq2 91.5 1e-13 seq30 82.4 5e-11 >seq83 Length=7591375 Score = 159 bits (176), Expect = 2e-34 Identities = 174/229 (76%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | ||| |||||||| | |||| ||||||||| ||||| ||||| || Sbjct 414267 CCTCCCCTCAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 414208 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| | || ||||| ||||| ||||| ||||||| | |||||||| | || Sbjct 414207 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 414148 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 414147 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCA 414090 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| ||||| |||||||| || ||||||||||| Sbjct 414089 CCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 Score = 145 bits (160), Expect = 5e-30 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| || ||| ||||| | || Sbjct 414025 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 413966 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| ||||||| | |||||||| | || | ||||||||||| Sbjct 413965 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 413906 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 413905 TTGGATCTTCGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 413848 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||||| ||||| |||||||| || ||||||||||| || Sbjct 413847 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTAT 413810 >seq138 Length=1287892 Score = 102 bits (112), Expect = 5e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | |||| ||| ||||| || || || || || Sbjct 343400 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAA 343459 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| |||| ||||| || || ||||| || | |||||||| | || Sbjct 343460 AGAGTACGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 343519 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || || || | || || || || || || || | ||| ||| ||| | Sbjct 343520 ATGCCTTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCCA 343577 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 343578 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 343626 >seq25 Length=31340621 Score = 102 bits (112), Expect = 5e-17 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 |||||| || || |||| |||| ||||||||||||||| ||||| || | | || | Sbjct 4762695 CCTCAGCACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCC 4762754 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| ||||||||||| || || |||||||||| |||||| || | || | | ||||| Sbjct 4762755 ATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGG-AATTCTTCCTT 4762813 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | || || ||| || | |||| | || || || || || | || | Sbjct 4762814 ATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTATT 4762873 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| |||||||| |||||||| Sbjct 4762874 AGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 4762909 Score = 82.4 bits (90), Expect = 5e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931 ||||||||||| | ||||| |||||| || || || | ||| ||| |||||| | Sbjct 6808321 CCCTCCTTGTCTTGAATTTTGGCTTTGAC--ATTCTCGATGGTGTCACTGGGCTCGACCT 6808264 Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | | ||| |||||||| ||||| |||||||| |||||||||||||| Sbjct 6808263 CGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6808218 >seq9 Length=54061371 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| ||| ||||| ||||| ||||| || || |||| |||| Sbjct 30845436 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 30845377 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||| || || ||||| || | |||||||| | || | || || || || Sbjct 30845376 TCCAGCAGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 30845317 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | ||| || ||| | || | ||| || | Sbjct 30845316 TGGATCTTAGCCTTCAC--ATTCTCAATGGTGTCACTGAGCTCCATCTCCAGGGTGATAG 30845259 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| | |||||||||||| Sbjct 30845258 TCTTGCCAGTCAGGGTCTTCATAAAGATCTGCAT 30845225 >seq2 Length=69027483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 |||||| ||| | |||| |||| ||||||||||||||| ||||| || | | | || | Sbjct 23646317 CCTCAGCACCTGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACACGGTACGTCC 23646258 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| ||||||||||| | || || ||||||| ||| || || | || | || ||||| Sbjct 23646257 ATCTTCCAGTTGCTTATCAGCAAACATCAGTCTTTGATGATCAGGAGGAATTCCTTCCTT 23646198 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | || || || || | |||| | || || || || || | || || Sbjct 23646197 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACCTCCATTGTAAT 23646138 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976 ||||| | || ||||| ||||| || ||||||| Sbjct 23646137 AGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCA 23646103 >seq30 Length=30016984 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/193 (70%), Gaps = 5/193 (3%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || ||||| ||||| || || | || |||| |||| ||||| || || || || || Sbjct 13544485 TCTTTCTGGATGTTGTAATCTGGGAGAGTGCGGCCATCCTCCAGCTGTTTACCTGCAAAT 13544426 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 ||||| | |||| || | | | |||||| |||| | | ||| |||||| || Sbjct 13544425 ATCAGATGCTGCTA-TCAGGTGAGATGCCCTCCATGTCTTGAAATTTCGCTTTGAC--AT 13544369 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | ||| ||| |||||| | | ||| |||||||| || || |||||||| | Sbjct 13544368 TCTCGATGGTGTCACTGGGCTCGACCTTGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCA 13544309 Query 34965 CAAAGATCTGCAT 34977 ||||||||||||| Sbjct 13544308 CAAAGATCTGCAT 13544296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325635073292117