Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq16 86.0 6e-12 >seq16 Length=44863414 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| ||||| ||||||||| ||||||| | ||||||||| ||||| || ||||| || Sbjct 42573786 TCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTA 42573845 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || || || ||||| | ||| | ||||| | |||||| | || | | || Sbjct 42573846 TCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCCAGCATAACA 42573905 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| | || | ||||||||||| || ||||| Sbjct 42573906 GTCTTCCTCGTAAGGGTTTTTACGAAAATCTGCAT 42573940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488455188807600