Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq25 147 4e-30 seq83 145 1e-29 seq2 140 6e-28 seq1035 138 2e-27 seq4 138 2e-27 seq16 125 1e-23 seq91 123 5e-23 seq30 113 9e-20 seq1 98.7 2e-15 seq34 84.2 4e-11 >seq25 Length=31340621 Score = 147 bits (162), Expect = 4e-30 Identities = 155/203 (76%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || ||||| || || || ||||| | | | | || ||||| ||||| Sbjct 4762708 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGC 4762767 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||||||| ||||| ||||| |||| ||||||||| || ||||| Sbjct 4762768 TTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTC-TTCCTTATCCTGGATCTTG 4762826 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||||||| || || || ||||| || || | || | ||||| ||||| Sbjct 4762827 GCTTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTATTAGTCTTCCCTGTA 4762886 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || |||||||| |||||||| Sbjct 4762887 AGGGTTTTTACAAAAATCTGCAT 4762909 >seq83 Length=7591375 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | |||||| || | |||||| || || || ||||| || || || || || Sbjct 414039 CCACCTCTGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 413980 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || || |||||||| | || || || || || || Sbjct 413979 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 413920 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| ||||| || || ||||| ||||| || ||| | || || || Sbjct 413919 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 413860 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 |||| || || |||||||| |||| ||||| || || ||||||||||| Sbjct 413859 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTAT 413810 >seq2 Length=69027483 Score = 140 bits (154), Expect = 6e-28 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || ||||| || || || ||||| | | | || ||||| ||||| Sbjct 23646304 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACACGGTACGTCCATCTTCCAGTTGC 23646245 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||| || |||||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 23646244 TTATCAGCAAACATCAGTCTTTGATGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 23646185 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || ||||| ||||| || |||| || || ||||| |||| Sbjct 23646184 GCCTTTACATTTTCTATAGTATCCGAGGGTTCAACCTCCATTGTAATAGTCTTCTCTGTA 23646125 Query 82788 AACGTCTTTACAAATATCTGCA 82809 | || ||||| || ||||||| Sbjct 23646124 AGGGTTTTTACGAAAATCTGCA 23646103 >seq1035 Length=9571 Score = 138 bits (152), Expect = 2e-27 Identities = 123/154 (80%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 82648 TTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTC 82707 ||||||||||||| | ||| || ||||||||||| | ||||||||| || || || || | Sbjct 2 TTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATAC 61 Query 82708 CTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCA 82767 ||||||| ||||| ||||| | || ||||| ||||| || ||| || ||| ||||||| Sbjct 62 CTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCCA 121 Query 82768 AAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||| || ||||| || ||||| ||||| || || Sbjct 122 AAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 155 >seq4 Length=67649338 Score = 138 bits (152), Expect = 2e-27 Identities = 153/203 (75%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| || ||||| || || || ||||||| ||| | || ||||| | ||| Sbjct 3346665 TGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGATA-AATACACCCATCTTCCATTTGC 3346723 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||| |||||||||| |||| |||| ||||| |||||||||||||||| ||||| Sbjct 3346724 TTACCAGAAAAGATTAGTTTTTGCTGATTGGGAGGAATTCCTTCCTTATCTTAGATCTTG 3346783 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||||||| || ||||| ||||| || || | | || ||||| || | Sbjct 3346784 GCTTTTACATTTTCTATAGTATCCAGTGGTTCAACCTCAAGCATGATGGTCTTCCCCATA 3346843 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || |||| || |||||||| Sbjct 3346844 AGGGTTTTTATGAAAATCTGCAT 3346866 >seq16 Length=44863414 Score = 125 bits (138), Expect = 1e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || || ||||| || | | ||||| | | | | || ||||| ||||| || ||| Sbjct 42573744 GTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTACATCCATCTTCCAGTTGCTTACCA 42573803 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| |||||||| ||||| ||||| |||||||||||||| || ||||| |||||| Sbjct 42573804 GCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTT 42573863 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 |||||||| || || || ||||| | |||| | | ||||| | || | || Sbjct 42573864 ACATTTTCTATAGTGTCCGAGGGTTCAGCCTCCAGCATAACAGTCTTCCTCGTAAGGGTT 42573923 Query 82794 TTTACAAATATCTGCAT 82810 ||||| || |||||||| Sbjct 42573924 TTTACGAAAATCTGCAT 42573940 >seq91 Length=6382753 Score = 123 bits (136), Expect = 5e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 |||||| | || || || || || |||| || | || ||||| | | | || || Sbjct 364190 CAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTCGTAGTCAGACAAGGTACGTCCATC 364249 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||||||||| || ||||||||||| || |||| ||||| ||||| ||||||||||||| Sbjct 364250 TTCTAGTTGCTTACCAGCAAAGATGAGACTTTACTGATCAGGAGGAATTCCTTCCTTATT 364309 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || ||||| |||||||||||||| || || | ||||| || || | ||| || || Sbjct 364310 CTGGATCTTGGCTTTTACATTTTCTATAGTGTTGGAGGGTTCAACCTCGAGAGTAATAGT 364369 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || | | || |||| || |||||||| Sbjct 364370 CTTCCCCATAAGGGTTTTTAAGAAAATCTGCAT 364402 >seq30 Length=30016984 Score = 113 bits (124), Expect = 9e-20 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| | || || |||| ||||| ||||||||||| || || ||||| | Sbjct 13544521 CCACCTCTCAGGTGAAGCACCAAGTATAGAGTGGATTCTTTCTGGATGTTGTAATCTGGG 13544462 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || ||||| || ||||| || || || | ||| || | Sbjct 13544461 AGAGTGCGGCCATCCTCCAGCTGTTTACCTGCAAATATCAGATGCTGCT-ATCAGGTGAG 13544403 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||| | ||||||| || ||||| ||||| || || || ||| | || || || Sbjct 13544402 ATGCCCTCCATGTCTTGAAATTTCGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACC 13544343 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | | || || ||||||||||||| ||||| ||||| |||||||| Sbjct 13544342 TTGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 13544296 >seq1 Length=90267253 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/131 (78%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||||| ||||| || ||||| ||||| | ||||||| Sbjct 20659493 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGG-AATCCTTCC 20659435 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || ||||||||||| || | || |||||| || || | || Sbjct 20659434 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGGGTC-CGAGGTTCAACCTCGAGCGTA 20659376 Query 82773 ATCGTCTTGCC 82783 || ||||| || Sbjct 20659375 ATAGTCTTCCC 20659365 >seq34 Length=22531781 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 82611 AGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTT 82670 ||||| || || || || || || || | ||| | | | | || ||||| |||| | Sbjct 4178351 AGAGTGGACTCCTTTTGAATGTTGTAGTGAGACAAAGTGCATCCATCTTCCAGTTTCCTG 4178410 Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||||||||| ||||| |||| ||||| || |||| |||| || |||| || Sbjct 4178411 CCAGCAAAGATTAGCCTTTGCTGATGAGGAGGAATGCCTTTTATATCCTGGGTCTTGGCC 4178470 Query 82731 TTTACATTTTCAATCGTAT 82749 ||||||||||| || |||| Sbjct 4178471 TTTACATTTTCTATAGTAT 4178489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981644253990077