Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq3 102 1e-16 >seq3 Length=68631033 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || || |||||||||| | |||||||||| | || || || || ||||||||||| || Sbjct 3243518 GCTTTGTGGTGGTACTTTGTATCTAAAGGAGTTGAGTATTTGGACACAGTGTTTTTTATC 3243459 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || ||||| ||| || || || || ||||| || | ||| |||||| Sbjct 3243458 CTAAGGAAGAAAAACAATCAGGTTTCTTTCCTTCATGTGTATCACCACTGTACCATGTTT 3243399 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || || | ||| | || ||||||||| | ||||| || || Sbjct 3243398 ACCTTGTGGTGGATTGGAATTAAATGGGTCGCAGGGGGACA 3243358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903246971136480