Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq83 150 2e-31 seq138 127 2e-24 seq9 109 5e-19 seq17 100 3e-16 >seq83 Length=7591375 Score = 150 bits (166), Expect = 2e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| | ||| || ||||||||||| Sbjct 414010 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 413951 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || |||||||||||| |||||||| |||||||| |||||| ||| Sbjct 413950 GGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCTTGGATCTTCGCCTT 413891 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 413890 GACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGT 413831 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 413830 CTTCACGAAGATCTGCAT 413813 Score = 150 bits (166), Expect = 2e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| | ||| || ||||||||||| Sbjct 414238 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 414179 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || |||||||||||| |||||||| |||||||| |||||| ||| Sbjct 414178 GGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCTTGGATCTTCGCCTT 414119 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 414118 GACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGT 414059 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 414058 CTTCACGAAGATCTGCAT 414041 >seq138 Length=1287892 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| ||||||||||| | || | | | || || | |||||||| Sbjct 343429 GGTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTACGGCCA-TCTTCCAACTGCTTGC 343487 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || |||||||| || || |||||| || Sbjct 343488 CTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCCTGGATCTTGGCCT 343547 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 343548 TCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 343607 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 343608 TCTTCACAAAGATCTGCAT 343626 >seq9 Length=54061371 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || | ||| | | | || || ||| |||||| Sbjct 30845422 GGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCAGCTTGC 30845364 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| ||||| |||||||| || || |||||| || Sbjct 30845363 CTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTAGCCT 30845304 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| || |||||| || | ||||| || ||||| ||||| | Sbjct 30845303 TCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAGGGTGATAGTCTTGCCAGTCAGGG 30845244 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || | || |||||||| Sbjct 30845243 TCTTCATAAAGATCTGCAT 30845225 >seq17 Length=43943611 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || | ||| | | | || || ||||||| | Sbjct 21311351 GGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTCCC 21311409 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| | ||||||||| || || |||||||| | || |||||| || Sbjct 21311410 CTGCAAATATGAGTCTCTGCTGGTCAGGGGGAATGCCTTCTGTATCCTGGATCTTGGCCT 21311469 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||| |||||||||| || | |||| ||| ||||| ||||| | Sbjct 21311470 TCACATTCTCAATGATGTCATTGGGCTCCACCTCCAGGGTGGTGGTCTTGCCAGTCAGGG 21311529 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || || ||||| Sbjct 21311530 TTTTCACAAAGATGTGCAT 21311548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483332920141320